2vvf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:04, 9 May 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
==CRYSTAL STRUCTURE OF THE MAJOR CAPSID PROTEIN P2 FROM BACTERIOPHAGE PM2==
+
 
-
<StructureSection load='2vvf' size='340' side='right' caption='[[2vvf]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
==Crystal structure of the major capsid protein P2 from Bacteriophage PM2==
 +
<StructureSection load='2vvf' size='340' side='right'caption='[[2vvf]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2vvf]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_phage_pm2 Pseudoalteromonas phage pm2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VVF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VVF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2vvf]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoalteromonas_virus_PM2 Pseudoalteromonas virus PM2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VVF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VVF FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vvf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vvf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vvf RCSB], [http://www.ebi.ac.uk/pdbsum/2vvf PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vvf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vvf OCA], [https://pdbe.org/2vvf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vvf RCSB], [https://www.ebi.ac.uk/pdbsum/2vvf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vvf ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CAPSD_BPPM2 CAPSD_BPPM2]] Major capsid protein.
+
[https://www.uniprot.org/uniprot/CAPSD_BPPM2 CAPSD_BPPM2] Major capsid protein.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vv/2vvf_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vv/2vvf_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vvf ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 26: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2vvf" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pseudoalteromonas phage pm2]]
+
[[Category: Large Structures]]
-
[[Category: Abrescia, N G.A]]
+
[[Category: Pseudoalteromonas virus PM2]]
-
[[Category: Assenberg, R]]
+
[[Category: Abrescia NGA]]
-
[[Category: Bamford, D H]]
+
[[Category: Assenberg R]]
-
[[Category: Bamford, J K.H]]
+
[[Category: Bamford DH]]
-
[[Category: Butcher, S J]]
+
[[Category: Bamford JKH]]
-
[[Category: Grimes, J M]]
+
[[Category: Butcher SJ]]
-
[[Category: Kivela, H K]]
+
[[Category: Grimes JM]]
-
[[Category: Stuart, D I]]
+
[[Category: Kivela HK]]
-
[[Category: Sutton, G C]]
+
[[Category: Stuart DI]]
-
[[Category: Double jelly-roll viral capsid]]
+
[[Category: Sutton GC]]
-
[[Category: Viral protein]]
+

Current revision

Crystal structure of the major capsid protein P2 from Bacteriophage PM2

PDB ID 2vvf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2vvf"
Personal tools