This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4g3m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:56, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Complex Structure of Bacillus subtilis RibG: The Deamination Process in Riboflavin Biosynthesis==
==Complex Structure of Bacillus subtilis RibG: The Deamination Process in Riboflavin Biosynthesis==
-
<StructureSection load='4g3m' size='340' side='right' caption='[[4g3m]], [[Resolution|resolution]] 2.56&Aring;' scene=''>
+
<StructureSection load='4g3m' size='340' side='right'caption='[[4g3m]], [[Resolution|resolution]] 2.56&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4g3m]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G3M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4G3M FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4g3m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G3M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G3M FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AI9:[(2R,3S,4S,5E)-5-[[5-AZANYL-2,4-BIS(OXIDANYLIDENE)-1H-PYRIMIDIN-6-YL]IMINO]-2,3,4-TRIS(OXIDANYL)PENTYL]+DIHYDROGEN+PHOSPHATE'>AI9</scene>, <scene name='pdbligand=AOF:N-(5-AMINO-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDIN-4-YL)-5-O-PHOSPHONO-BETA-D-RIBOFURANOSYLAMINE'>AOF</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.56&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2b3z|2b3z]], [[3ex8|3ex8]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AI9:[(2R,3S,4S,5E)-5-[[5-AZANYL-2,4-BIS(OXIDANYLIDENE)-1H-PYRIMIDIN-6-YL]IMINO]-2,3,4-TRIS(OXIDANYL)PENTYL]+DIHYDROGEN+PHOSPHATE'>AI9</scene>, <scene name='pdbligand=AOF:N-(5-AMINO-2,6-DIOXO-1,2,3,6-TETRAHYDROPYRIMIDIN-4-YL)-5-O-PHOSPHONO-BETA-D-RIBOFURANOSYLAMINE'>AOF</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU23280, ribD, ribG ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 Bacillus subtilis subsp. subtilis str. 168])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4g3m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g3m OCA], [https://pdbe.org/4g3m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4g3m RCSB], [https://www.ebi.ac.uk/pdbsum/4g3m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4g3m ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4g3m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g3m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4g3m RCSB], [http://www.ebi.ac.uk/pdbsum/4g3m PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RIBD_BACSU RIBD_BACSU]] Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.
+
[https://www.uniprot.org/uniprot/RIBD_BACSU RIBD_BACSU] Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4g3m" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 23: Line 24:
</StructureSection>
</StructureSection>
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
-
[[Category: Chang, T H]]
+
[[Category: Large Structures]]
-
[[Category: Chen, S C]]
+
[[Category: Chang TH]]
-
[[Category: Lai, W L]]
+
[[Category: Chen SC]]
-
[[Category: Liaw, S H]]
+
[[Category: Lai WL]]
-
[[Category: Shen, C Y]]
+
[[Category: Liaw SH]]
-
[[Category: Yen, T M]]
+
[[Category: Shen CY]]
-
[[Category: Yu, H C]]
+
[[Category: Yen TM]]
-
[[Category: Alpha/beta/alpha]]
+
[[Category: Yu HC]]
-
[[Category: Deaminase domain]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Reductase domain]]
+

Current revision

Complex Structure of Bacillus subtilis RibG: The Deamination Process in Riboflavin Biosynthesis

PDB ID 4g3m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4g3m"
Personal tools