This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2kv7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:49, 1 May 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==NMR solution structure of a soluble PrgI mutant from Salmonella Typhimurium==
==NMR solution structure of a soluble PrgI mutant from Salmonella Typhimurium==
-
<StructureSection load='2kv7' size='340' side='right' caption='[[2kv7]], [[NMR_Ensembles_of_Models | 25 NMR models]]' scene=''>
+
<StructureSection load='2kv7' size='340' side='right'caption='[[2kv7]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2kv7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KV7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KV7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2kv7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KV7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KV7 FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">prgI, STM2873 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kv7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kv7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kv7 RCSB], [http://www.ebi.ac.uk/pdbsum/2kv7 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kv7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kv7 OCA], [https://pdbe.org/2kv7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kv7 RCSB], [https://www.ebi.ac.uk/pdbsum/2kv7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kv7 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PRGI_SALTY PRGI_SALTY]] Required for invasion of epithelial cells.
+
[https://www.uniprot.org/uniprot/PRGI_SALTY PRGI_SALTY] Required for invasion of epithelial cells.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kv/2kv7_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kv/2kv7_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kv7 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
+
[[Category: Large Structures]]
-
[[Category: Ader, C]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344]]
-
[[Category: Baldus, M]]
+
[[Category: Ader C]]
-
[[Category: Delissen, F]]
+
[[Category: Baldus M]]
-
[[Category: Goosmann, C]]
+
[[Category: Delissen F]]
-
[[Category: Griesinger, C]]
+
[[Category: Goosmann C]]
-
[[Category: Kolbe, M]]
+
[[Category: Griesinger C]]
-
[[Category: Lange, A]]
+
[[Category: Kolbe M]]
-
[[Category: Laube, B]]
+
[[Category: Lange A]]
-
[[Category: Poyraz, O]]
+
[[Category: Laube B]]
-
[[Category: Schmidt, H]]
+
[[Category: Poyraz O]]
-
[[Category: Seidel, K]]
+
[[Category: Schmidt H]]
-
[[Category: Tenenboim, H]]
+
[[Category: Seidel K]]
-
[[Category: Thuenemann, A F]]
+
[[Category: Tenenboim H]]
-
[[Category: Zychlinski, A]]
+
[[Category: Thuenemann AF]]
-
[[Category: Bacterial pathogenesis]]
+
[[Category: Zychlinski A]]
-
[[Category: Needle protomer]]
+
-
[[Category: Prgi]]
+
-
[[Category: Protein transport]]
+
-
[[Category: Transport]]
+
-
[[Category: Type three secretion needle]]
+
-
[[Category: Virulence]]
+

Current revision

NMR solution structure of a soluble PrgI mutant from Salmonella Typhimurium

PDB ID 2kv7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools