2vbn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:13, 13 December 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers==
==Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers==
-
<StructureSection load='2vbn' size='340' side='right' caption='[[2vbn]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='2vbn' size='340' side='right'caption='[[2vbn]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2vbn]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2VBN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2vbn]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VBN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VBN FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1g9z|1g9z]], [[1bp7|1bp7]], [[2vbl|2vbl]], [[1af5|1af5]], [[2vbj|2vbj]], [[2vbo|2vbo]], [[1mow|1mow]], [[1g9y|1g9y]], [[1n3f|1n3f]], [[1t9i|1t9i]], [[1u0d|1u0d]], [[1t9j|1t9j]], [[1n3e|1n3e]], [[1u0c|1u0c]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2vbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2vbn RCSB], [http://www.ebi.ac.uk/pdbsum/2vbn PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vbn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vbn OCA], [https://pdbe.org/2vbn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vbn RCSB], [https://www.ebi.ac.uk/pdbsum/2vbn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vbn ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/DNE1_CHLRE DNE1_CHLRE]] Endonuclease involved in group I intron homing. Recognizes and cleaves a 19-24 bp palindromic DNA site.
+
[https://www.uniprot.org/uniprot/DNE1_CHLRE DNE1_CHLRE] Endonuclease involved in group I intron homing. Recognizes and cleaves a 19-24 bp palindromic DNA site.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vb/2vbn_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vb/2vbn_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vbn ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 27: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2vbn" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Endonuclease|Endonuclease]]
+
*[[Endonuclease 3D structures|Endonuclease 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 35: Line 37:
</StructureSection>
</StructureSection>
[[Category: Chlamydomonas reinhardtii]]
[[Category: Chlamydomonas reinhardtii]]
-
[[Category: Alibes, A]]
+
[[Category: Large Structures]]
-
[[Category: Arnould, S]]
+
[[Category: Alibes A]]
-
[[Category: Blanco, F J]]
+
[[Category: Arnould S]]
-
[[Category: Cabaniols, J P]]
+
[[Category: Blanco FJ]]
-
[[Category: Duchateau, P]]
+
[[Category: Cabaniols JP]]
-
[[Category: Montoya, G]]
+
[[Category: Duchateau P]]
-
[[Category: Munoz, I G]]
+
[[Category: Montoya G]]
-
[[Category: Paques, F]]
+
[[Category: Munoz IG]]
-
[[Category: Perez, C]]
+
[[Category: Paques F]]
-
[[Category: Prieto, J]]
+
[[Category: Perez C]]
-
[[Category: Redondo, P]]
+
[[Category: Prieto J]]
-
[[Category: Serrano, L]]
+
[[Category: Redondo P]]
-
[[Category: Stricher, F]]
+
[[Category: Serrano L]]
-
[[Category: Chloroplast]]
+
[[Category: Stricher F]]
-
[[Category: Cutting dna endonuclease]]
+
-
[[Category: Endonuclease]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Ini3- 4_magnesium]]
+
-
[[Category: Intron homing]]
+
-
[[Category: Nuclease]]
+
-
[[Category: Uv-induced dna damage]]
+

Current revision

Molecular basis of human XPC gene recognition and cleavage by engineered homing endonuclease heterodimers

PDB ID 2vbn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools