4e9b
From Proteopedia
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==Structure of Peptide Deformylase form Helicobacter Pylori in complex with actinonin== | ==Structure of Peptide Deformylase form Helicobacter Pylori in complex with actinonin== | ||
| - | <StructureSection load='4e9b' size='340' side='right' caption='[[4e9b]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='4e9b' size='340' side='right'caption='[[4e9b]], [[Resolution|resolution]] 1.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4e9b]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[4e9b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E9B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4E9B FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BB2:ACTINONIN'>BB2</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4e9b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e9b OCA], [https://pdbe.org/4e9b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4e9b RCSB], [https://www.ebi.ac.uk/pdbsum/4e9b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4e9b ProSAT]</span></td></tr> | |
| - | + | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/Q672W7_HELPX Q672W7_HELPX] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163] |
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Helicobacter pylori]] | [[Category: Helicobacter pylori]] | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Cui | + | [[Category: Cui K]] |
| - | [[Category: Huang | + | [[Category: Huang J]] |
| - | [[Category: Lu | + | [[Category: Lu W]] |
| - | [[Category: Zhu | + | [[Category: Zhu L]] |
| - | + | ||
Current revision
Structure of Peptide Deformylase form Helicobacter Pylori in complex with actinonin
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Categories: Helicobacter pylori | Large Structures | Cui K | Huang J | Lu W | Zhu L
