1bmv
From Proteopedia
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==PROTEIN-RNA INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION== | ==PROTEIN-RNA INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION== | ||
| - | <StructureSection load='1bmv' size='340' side='right' caption='[[1bmv]], [[Resolution|resolution]] 3.00Å' scene=''> | + | <StructureSection load='1bmv' size='340' side='right'caption='[[1bmv]], [[Resolution|resolution]] 3.00Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1bmv]] is a 3 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[1bmv]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bean_pod_mottle_virus Bean pod mottle virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BMV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BMV FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3Å</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bmv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bmv OCA], [https://pdbe.org/1bmv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bmv RCSB], [https://www.ebi.ac.uk/pdbsum/1bmv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bmv ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/POL2_BPMV POL2_BPMV] Movement protein: transports viral genome to neighboring plant cells directly through plasmosdesmata, without any budding. The movement protein allows efficient cell to cell propagation, by bypassing the host cell wall barrier. Acts by forming a tubular structure at the host plasmodesmata, enlarging it enough to allow free passage of virion capsids (By similarity). |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bm/1bmv_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bm/1bmv_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bmv ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 1bmv" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Virus coat | + | *[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Bean pod mottle virus]] | [[Category: Bean pod mottle virus]] | ||
| - | [[Category: Bomu | + | [[Category: Large Structures]] |
| - | [[Category: Chen | + | [[Category: Bomu W]] |
| - | [[Category: Johnson | + | [[Category: Chen Z]] |
| - | [[Category: Kamer | + | [[Category: Johnson JE]] |
| - | [[Category: Li | + | [[Category: Kamer G]] |
| - | [[Category: Lomonossoff | + | [[Category: Li Y]] |
| - | [[Category: Schmidt | + | [[Category: Lomonossoff G]] |
| - | [[Category: Shanks | + | [[Category: Schmidt T]] |
| - | [[Category: Stauffacher | + | [[Category: Shanks M]] |
| - | + | [[Category: Stauffacher C]] | |
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Current revision
PROTEIN-RNA INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION
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Categories: Bean pod mottle virus | Large Structures | Bomu W | Chen Z | Johnson JE | Kamer G | Li Y | Lomonossoff G | Schmidt T | Shanks M | Stauffacher C
