This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3rn4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:18, 1 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of iron-substituted Sod2 from Saccharomyces cerevisiae==
==Crystal structure of iron-substituted Sod2 from Saccharomyces cerevisiae==
-
<StructureSection load='3rn4' size='340' side='right' caption='[[3rn4]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
+
<StructureSection load='3rn4' size='340' side='right'caption='[[3rn4]], [[Resolution|resolution]] 1.79&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3rn4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3RN4 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3rn4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3RN4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3RN4 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.79&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3bfr|3bfr]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SOD2, YHR008C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rn4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rn4 OCA], [https://pdbe.org/3rn4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rn4 RCSB], [https://www.ebi.ac.uk/pdbsum/3rn4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rn4 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rn4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rn4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rn4 RCSB], [http://www.ebi.ac.uk/pdbsum/3rn4 PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/SODM_YEAST SODM_YEAST]] Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
+
[https://www.uniprot.org/uniprot/SODM_YEAST SODM_YEAST] Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3rn4" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Superoxide Dismutase|Superoxide Dismutase]]
+
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Saccharomyces cerevisiae]]
+
[[Category: Large Structures]]
-
[[Category: Superoxide dismutase]]
+
[[Category: Saccharomyces cerevisiae S288C]]
-
[[Category: Cheng, W]]
+
[[Category: Cheng W]]
-
[[Category: He, Y X]]
+
[[Category: He Y-X]]
-
[[Category: Kang, Y]]
+
[[Category: Kang Y]]
-
[[Category: Li, W F]]
+
[[Category: Li W-F]]
-
[[Category: Zhou, C Z]]
+
[[Category: Zhou C-Z]]
-
[[Category: Iron-binding]]
+
-
[[Category: Mitochondrial manganese superoxide dismutase]]
+
-
[[Category: Mitochondrion]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of iron-substituted Sod2 from Saccharomyces cerevisiae

PDB ID 3rn4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3rn4"
Personal tools