4qp5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:34, 20 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Catalytic domain of the antimicrobial peptidase lysostaphin from Staphylococcus simulans crystallized in the presence of phosphate==
==Catalytic domain of the antimicrobial peptidase lysostaphin from Staphylococcus simulans crystallized in the presence of phosphate==
-
<StructureSection load='4qp5' size='340' side='right' caption='[[4qp5]], [[Resolution|resolution]] 1.26&Aring;' scene=''>
+
<StructureSection load='4qp5' size='340' side='right'caption='[[4qp5]], [[Resolution|resolution]] 1.26&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4qp5]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QP5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4QP5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4qp5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_simulans_bv._staphylolyticus Staphylococcus simulans bv. staphylolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4QP5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4QP5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.26&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4lxc|4lxc]], [[1qwy|1qwy]], [[2b0p|2b0p]], [[2b13|2b13]], [[2b44|2b44]], [[4bh5|4bh5]], [[3it5|3it5]], [[3it7|3it7]], [[1r77|1r77]], [[4qpb|4qpb]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysostaphin Lysostaphin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.75 3.4.24.75] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4qp5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qp5 OCA], [https://pdbe.org/4qp5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4qp5 RCSB], [https://www.ebi.ac.uk/pdbsum/4qp5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4qp5 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4qp5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4qp5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4qp5 RCSB], [http://www.ebi.ac.uk/pdbsum/4qp5 PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/LSTP_STASI LSTP_STASI]] Lyses staphylococcal cells by hydrolyzing the polyglycine interpeptide bridges of the peptidoglycan.
+
[https://www.uniprot.org/uniprot/LSTP_STASI LSTP_STASI] Lyses staphylococcal cells by hydrolyzing the polyglycine interpeptide bridges of the peptidoglycan.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4qp5" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lysostaphin]]
+
[[Category: Large Structures]]
-
[[Category: Bardelang, P T]]
+
[[Category: Staphylococcus simulans bv. staphylolyticus]]
-
[[Category: Bochtler, M]]
+
[[Category: Bardelang PT]]
-
[[Category: Czapinska, H]]
+
[[Category: Bochtler M]]
-
[[Category: Dahms, S O]]
+
[[Category: Czapinska H]]
-
[[Category: Jagielska, E]]
+
[[Category: Dahms SO]]
-
[[Category: James, R]]
+
[[Category: Jagielska E]]
-
[[Category: Sabala, I]]
+
[[Category: James R]]
-
[[Category: Sharpe, J A]]
+
[[Category: Sabala I]]
-
[[Category: Than, M E]]
+
[[Category: Sharpe JA]]
-
[[Category: Thomas, N R]]
+
[[Category: Than ME]]
-
[[Category: Extracellular]]
+
[[Category: Thomas NR]]
-
[[Category: Hydrolase]]
+
-
[[Category: Metallopeptidase]]
+
-
[[Category: Peptidase family m23]]
+
-
[[Category: Peptidoglycan]]
+
-
[[Category: Peptidoglycan amidase]]
+

Current revision

Catalytic domain of the antimicrobial peptidase lysostaphin from Staphylococcus simulans crystallized in the presence of phosphate

PDB ID 4qp5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools