3udq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (02:30, 21 November 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of BACE with Compound 13==
==Crystal Structure of BACE with Compound 13==
-
<StructureSection load='3udq' size='340' side='right' caption='[[3udq]], [[Resolution|resolution]] 2.73&Aring;' scene=''>
+
<StructureSection load='3udq' size='340' side='right'caption='[[3udq]], [[Resolution|resolution]] 2.73&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3udq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UDQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3UDQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3udq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UDQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UDQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=09E:(4S)-6-BROMO-1,1-DIOXIDO-3,4-DIHYDRO-2H-THIOCHROMEN-4-YL+(3S,5R)-2-OXO-1,2-DIHYDROSPIRO[INDOLE-3,3-PYRROLIDINE]-5-CARBOXYLATE'>09E</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.73&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3udh|3udh]], [[3udj|3udj]], [[3udk|3udk]], [[3udm|3udm]], [[3udn|3udn]], [[3udp|3udp]], [[3udr|3udr]], [[3udy|3udy]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=09E:(4S)-6-BROMO-1,1-DIOXIDO-3,4-DIHYDRO-2H-THIOCHROMEN-4-YL+(3S,5R)-2-OXO-1,2-DIHYDROSPIRO[INDOLE-3,3-PYRROLIDINE]-5-CARBOXYLATE'>09E</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BACE1, BACE, KIAA1149 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3udq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3udq OCA], [https://pdbe.org/3udq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3udq RCSB], [https://www.ebi.ac.uk/pdbsum/3udq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3udq ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Memapsin_2 Memapsin 2], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.46 3.4.23.46] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3udq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3udq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3udq RCSB], [http://www.ebi.ac.uk/pdbsum/3udq PDBsum]</span></td></tr>
+
</table>
</table>
-
== Function ==
 
-
[[http://www.uniprot.org/uniprot/BACE1_HUMAN BACE1_HUMAN]] Responsible for the proteolytic processing of the amyloid precursor protein (APP). Cleaves at the N-terminus of the A-beta peptide sequence, between residues 671 and 672 of APP, leads to the generation and extracellular release of beta-cleaved soluble APP, and a corresponding cell-associated C-terminal fragment which is later released by gamma-secretase.<ref>PMID:10677483</ref> <ref>PMID:20354142</ref>
 
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 16:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3udq" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Beta secretase|Beta secretase]]
+
*[[Beta secretase 3D structures|Beta secretase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 27: Line 25:
</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Memapsin 2]]
+
[[Category: Large Structures]]
-
[[Category: Borzilleri, K]]
+
[[Category: Borzilleri K]]
-
[[Category: Capetta, S]]
+
[[Category: Capetta S]]
-
[[Category: Connell, T O]]
+
[[Category: Dorff P]]
-
[[Category: Dorff, P]]
+
[[Category: Dutra J]]
-
[[Category: Dutra, J]]
+
[[Category: Efremov IV]]
-
[[Category: Efremov, I V]]
+
[[Category: Mansour M]]
-
[[Category: Mansour, M]]
+
[[Category: O'Connell T]]
-
[[Category: Oborski, C]]
+
[[Category: O'Sullivan TJ]]
-
[[Category: Pandit, J]]
+
[[Category: Oborski C]]
-
[[Category: Sullivan, T J.O]]
+
[[Category: Pandit J]]
-
[[Category: Vajdos, F F]]
+
[[Category: Vajdos FF]]
-
[[Category: Wang, H]]
+
[[Category: Wang H]]
-
[[Category: Withka, J]]
+
[[Category: Withka J]]
-
[[Category: Hydrolase-hydrolase inhibitor complex]]
+

Current revision

Crystal Structure of BACE with Compound 13

PDB ID 3udq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools