This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3i9j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:56, 1 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of ADP ribosyl cyclase complexed with a substrate analog and a product nicotinamide==
==Crystal structure of ADP ribosyl cyclase complexed with a substrate analog and a product nicotinamide==
-
<StructureSection load='3i9j' size='340' side='right' caption='[[3i9j]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
+
<StructureSection load='3i9j' size='340' side='right'caption='[[3i9j]], [[Resolution|resolution]] 2.18&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3i9j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aplysia_californica Aplysia californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I9J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3I9J FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3i9j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aplysia_californica Aplysia californica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I9J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I9J FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AVV:[(2R,3S,4R,5R)-5-(6-AMINO-2-FLUORO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL+[(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL+DIHYDROGEN+DIPHOSPHATE'>AVV</scene>, <scene name='pdbligand=NCA:NICOTINAMIDE'>NCA</scene>, <scene name='pdbligand=NFD:NICOTINAMIDE+2-FLUORO-ADENINE+DINUCLEOTIDE'>NFD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.18&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3i9k|3i9k]], [[3i9l|3i9l]], [[3i9m|3i9m]], [[3i9n|3i9n]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AVV:[(2R,3S,4R,5R)-5-(6-AMINO-2-FLUORO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL+[(2R,3S,4S)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL+DIHYDROGEN+DIPHOSPHATE'>AVV</scene>, <scene name='pdbligand=NCA:NICOTINAMIDE'>NCA</scene>, <scene name='pdbligand=NFD:NICOTINAMIDE+2-FLUORO-ADENINE+DINUCLEOTIDE'>NFD</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(+)_nucleosidase NAD(+) nucleosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.5 3.2.2.5] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i9j OCA], [https://pdbe.org/3i9j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i9j RCSB], [https://www.ebi.ac.uk/pdbsum/3i9j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i9j ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3i9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i9j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3i9j RCSB], [http://www.ebi.ac.uk/pdbsum/3i9j PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NADA_APLCA NADA_APLCA]] Synthesizes the second messagers cyclic ADP-ribose and nicotinate-adenine dinucleotide phosphate, the former a second messenger for calcium mobilization from endoplasmic reticulum. Also has cADPr hydrolase activity.<ref>PMID:11829748</ref>
+
[https://www.uniprot.org/uniprot/NADA_APLCA NADA_APLCA] Synthesizes the second messagers cyclic ADP-ribose and nicotinate-adenine dinucleotide phosphate, the former a second messenger for calcium mobilization from endoplasmic reticulum. Also has cADPr hydrolase activity.<ref>PMID:11829748</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i9/3i9j_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i9/3i9j_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i9j ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 28: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3i9j" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[ADP-ribosyl cyclase|ADP-ribosyl cyclase]]
+
*[[Cluster of Differentiation CD38|Cluster of Differentiation CD38]]
== References ==
== References ==
<references/>
<references/>
Line 36: Line 37:
</StructureSection>
</StructureSection>
[[Category: Aplysia californica]]
[[Category: Aplysia californica]]
-
[[Category: Graeff, R]]
+
[[Category: Large Structures]]
-
[[Category: Hao, Q]]
+
[[Category: Graeff R]]
-
[[Category: Jiang, H]]
+
[[Category: Hao Q]]
-
[[Category: Kriksunov, I A]]
+
[[Category: Jiang H]]
-
[[Category: Lee, H C]]
+
[[Category: Kriksunov IA]]
-
[[Category: Lin, H]]
+
[[Category: Lee HC]]
-
[[Category: Liu, Q]]
+
[[Category: Lin H]]
-
[[Category: Oppenheimer, N]]
+
[[Category: Liu Q]]
-
[[Category: Potter, B V.L]]
+
[[Category: Oppenheimer N]]
-
[[Category: Zhang, B]]
+
[[Category: Potter BVL]]
-
[[Category: Adp-ribosyl cyclase]]
+
[[Category: Zhang B]]
-
[[Category: Disulfide bond]]
+
-
[[Category: Enzyme-analog-nicotinamide complex]]
+
-
[[Category: Fertilization]]
+
-
[[Category: Homodimer]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Nad]]
+

Current revision

Crystal structure of ADP ribosyl cyclase complexed with a substrate analog and a product nicotinamide

PDB ID 3i9j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools