User:Shai Biran/Practice Proteopedia tutorial shai
From Proteopedia
< User:Shai Biran(Difference between revisions)
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=='''Creating a page in Proteopedia is easy and fun!'''== | =='''Creating a page in Proteopedia is easy and fun!'''== | ||
| - | + | The first step, before you can start editing and creating Proteopedia pages, you must attain a '''user''' ID. Press the link on your upper right corner whee it says '''Log in / request account''' and follow the instructions. For this tutorial, you can use the student account given by the instructor. | |
| + | <StructureSection load='1stp' size='340' side='right' caption='Caption for this structure' scene=''> | ||
| + | <scene name='65/651279/1stp_color/1'>Scenes</scene> are easy to create. | ||
You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue. | ||
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== Adding and changing structures in your page == | == Adding and changing structures in your page == | ||
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*In a new page: | *In a new page: | ||
#go to http://proteopedia.org and type ‘Hemoglobin’ in the empty white search box on the left-hand toolbar, then press ‘Go’. | #go to http://proteopedia.org and type ‘Hemoglobin’ in the empty white search box on the left-hand toolbar, then press ‘Go’. | ||
| - | #Explore the first section. Press the green links. Stop before ‘Hemoglobin subunit binding O2’ | + | #Explore the first section. Press the <scene name='65/651279/1stp_color2/1'>green links</scene>. Stop before ‘Hemoglobin subunit binding O2’ |
*Now type ‘Peptide’ in the search box and press ‘Go’. Explore this page. again, see what the green links do. | *Now type ‘Peptide’ in the search box and press ‘Go’. Explore this page. again, see what the green links do. | ||
| - | *Navigate back to the [http://proteopedia.org/wiki/index.php/Main_Page | + | *Navigate back to the [[http://proteopedia.org/wiki/index.php/Main_Page Main Page]] by clicking the link ‘Main Page’ on the left-hand toolbar. |
#Scroll down to ‘What can Proteopedia do for me’ and in the ‘Educators’ column, click on the link ‘tutorials or molecular scenes’, you will be taken to a new page. | #Scroll down to ‘What can Proteopedia do for me’ and in the ‘Educators’ column, click on the link ‘tutorials or molecular scenes’, you will be taken to a new page. | ||
#Now click on the link titled ‘Structural_Templates’ | #Now click on the link titled ‘Structural_Templates’ | ||
#Scroll down to the section titled ‘Secondary structure elements’. | #Scroll down to the section titled ‘Secondary structure elements’. | ||
#Explore this section, but stop before the section titled ‘Turns and loops’ | #Explore this section, but stop before the section titled ‘Turns and loops’ | ||
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| + | == STOP here == | ||
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| + | </StructureSection> | ||
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| + | '''''What are we going to learn?''''' | ||
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| + | How to create your own pages in Proteopedia, including '''3D''' structures and <scene name='65/651279/1stp_color3/2'>green links</scene>. | ||
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| + | [[User:Shai Biran/Practice Proteopedia tutorial shai1|Next page (2)]] | ||
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| + | == References == | ||
| + | <references/> | ||
Current revision
Creating a page in Proteopedia is easy and fun!
The first step, before you can start editing and creating Proteopedia pages, you must attain a user ID. Press the link on your upper right corner whee it says Log in / request account and follow the instructions. For this tutorial, you can use the student account given by the instructor.
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What are we going to learn?
How to create your own pages in Proteopedia, including 3D structures and .
References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
