4rw5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:23, 6 November 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 4rw5 is ON HOLD until Paper Publication
+
==Structural insights into substrate binding of brown spider venom class II phospholipases D==
 +
<StructureSection load='4rw5' size='340' side='right'caption='[[4rw5]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4rw5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Loxosceles_intermedia Loxosceles intermedia]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4RW5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4RW5 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=OCA:OCTANOIC+ACID+(CAPRYLIC+ACID)'>OCA</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene>, <scene name='pdbligand=TDA:N-TRIDECANOIC+ACID'>TDA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4rw5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4rw5 OCA], [https://pdbe.org/4rw5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4rw5 RCSB], [https://www.ebi.ac.uk/pdbsum/4rw5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4rw5 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A1HB2_LOXIN A1HB2_LOXIN] Catalyzes the hydrolysis of sphingomyelin. May also acts on other phosphatidyl esters. Induces complement-dependent hemolysis, dermonecrosis, blood vessel permeability and platelet aggregation.<ref>PMID:9790962</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Phospholipases D (PLDs) the major dermonecrotic factors from brown spider venoms trigger a range of biological reactions both in vitro and in vivo. Despite their clinical relevance in loxoscelism, structural data is restricted to the apo-form of these enzymes, which has been instrumental in understanding the functional differences between the class I and II spider PLDs. The crystal structures of the native class II PLD from Loxosceles intermedia complexed with myo-inositol 1-phosphate and the inactive mutant H12A complexed with fatty acids indicate the existence of a strong ligand-dependent conformation change of the highly conserved aromatic residues, Tyr 223 and Trp225 indicating their roles in substrate binding. These results provided insights into the structural determinants for substrate recognition and binding by class II PLDs.
-
Authors: Coronado, M.A., Ullah, A., da Silva, L.S., Chaves-Moreira, D., Vuitika, L., Chaim, O.M., Veiga, S.S., Chahine, J., Murakami, M.T., Arni, R.K.
+
Structural Insights into Substrate Binding of Brown Spider Venom Class II Phospholipases D.,Coronado MA, Ullah A, da Silva LS, Chaves-Moreira D, Vuitika L, Chaim OM, Veiga SS, Chahine J, Murakami MT, Arni RK Curr Protein Pept Sci. 2015 May 5. PMID:25961401<ref>PMID:25961401</ref>
-
Description: Structural insights into substrate binding of brown spider venom class II phospholipases D
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Coronado, M.A]]
+
<div class="pdbe-citations 4rw5" style="background-color:#fffaf0;"></div>
-
[[Category: Vuitika, L]]
+
 
-
[[Category: Chaves-Moreira, D]]
+
==See Also==
-
[[Category: Arni, R.K]]
+
*[[Phospholipase D 3D structures|Phospholipase D 3D structures]]
-
[[Category: Chahine, J]]
+
== References ==
-
[[Category: Chaim, O.M]]
+
<references/>
-
[[Category: Ullah, A]]
+
__TOC__
-
[[Category: Da Silva, L.S]]
+
</StructureSection>
-
[[Category: Murakami, M.T]]
+
[[Category: Large Structures]]
-
[[Category: Veiga, S.S]]
+
[[Category: Loxosceles intermedia]]
 +
[[Category: Arni RK]]
 +
[[Category: Chahine J]]
 +
[[Category: Chaim OM]]
 +
[[Category: Chaves-Moreira D]]
 +
[[Category: Coronado MA]]
 +
[[Category: Murakami MT]]
 +
[[Category: Ullah A]]
 +
[[Category: Veiga SS]]
 +
[[Category: Vuitika L]]
 +
[[Category: Da Silva LS]]

Current revision

Structural insights into substrate binding of brown spider venom class II phospholipases D

PDB ID 4rw5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools