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2g3w

From Proteopedia

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[[Image:2g3w.gif|left|200px]]
 
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{{Structure
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==The Crystal Structure of YaeQ Protein from Xanthomonas axonopodis pv. citri==
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|PDB= 2g3w |SIZE=350|CAPTION= <scene name='initialview01'>2g3w</scene>, resolution 1.90&Aring;
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<StructureSection load='2g3w' size='340' side='right'caption='[[2g3w]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=ACT:ACETATE ION'>ACT</scene>
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<table><tr><td colspan='2'>[[2g3w]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G3W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G3W FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
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|GENE= XAC2396 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=92829 Xanthomonas axonopodis pv. citri])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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}}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g3w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g3w OCA], [https://pdbe.org/2g3w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g3w RCSB], [https://www.ebi.ac.uk/pdbsum/2g3w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g3w ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g3/2g3w_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g3w ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The YaeQ family of proteins are found in many Gram-negative and a few Gram-positive bacteria. We have determined the first structure of a member of the YaeQ family by X-ray crystallography. Comparisons with other structures indicate that YaeQ represents a new compact protein fold built around a variation of the PD-(D/E)XK nuclease motif found in type II endonucleases and enzymes involved in DNA replication, repair, and recombination. We show that catalytically important residues in the PD-(D/E)XK nuclease superfamily are spatially conserved in YaeQ and other highly conserved YaeQ residues may be poised to interact with nucleic acid structures.
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'''The Crystal Structure of YaeQ Protein from Xanthomonas axonopodis pv. citri'''
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Structure of Xanthomonas axonopodis pv. citri YaeQ reveals a new compact protein fold built around a variation of the PD-(D/E)XK nuclease motif.,Guzzo CR, Nagem RA, Barbosa JA, Farah CS Proteins. 2007 Nov 15;69(3):644-51. PMID:17623842<ref>PMID:17623842</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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2G3W is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Xanthomonas_axonopodis_pv._citri Xanthomonas axonopodis pv. citri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G3W OCA].
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<div class="pdbe-citations 2g3w" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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== References ==
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[[Category: Xanthomonas axonopodis pv. citri]]
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<references/>
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[[Category: Barbosa, J A.R G.]]
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__TOC__
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[[Category: Farah, C S.]]
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</StructureSection>
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[[Category: Guzzo, C R.]]
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[[Category: Large Structures]]
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[[Category: Nagem, R A.P.]]
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[[Category: Barbosa, J A.R G]]
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[[Category: ACT]]
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[[Category: Farah, C S]]
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[[Category: xanthomonas axonopodis pv citri]]
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[[Category: Guzzo, C R]]
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[[Category: yaeq protein]]
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[[Category: Nagem, R A.P]]
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[[Category: Unknown function]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:00:03 2008''
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[[Category: Xanthomonas axonopodis pv citri]]
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[[Category: Yaeq protein]]

Current revision

The Crystal Structure of YaeQ Protein from Xanthomonas axonopodis pv. citri

PDB ID 2g3w

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