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2g87

From Proteopedia

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[[Image:2g87.jpg|left|200px]]
 
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{{Structure
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==Crystallographic model of bathorhodopsin==
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|PDB= 2g87 |SIZE=350|CAPTION= <scene name='initialview01'>2g87</scene>, resolution 2.6&Aring;
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<StructureSection load='2g87' size='340' side='right'caption='[[2g87]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene> and <scene name='pdbligand=HTG:HEPTYL 1-THIOHEXOPYRANOSIDE'>HTG</scene>
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<table><tr><td colspan='2'>[[2g87]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2G87 FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=HTG:HEPTYL+1-THIOHEXOPYRANOSIDE'>HTG</scene>, <scene name='pdbligand=HTO:HEPTANE-1,2,3-TRIOL'>HTO</scene>, <scene name='pdbligand=PLM:PALMITIC+ACID'>PLM</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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|GENE=
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
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}}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2g87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2g87 OCA], [https://pdbe.org/2g87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2g87 RCSB], [https://www.ebi.ac.uk/pdbsum/2g87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2g87 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/OPSD_BOVIN OPSD_BOVIN]] Photoreceptor required for image-forming vision at low light intensity. Required for photoreceptor cell viability after birth. Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change leading to G-protein activation and release of all-trans retinal (By similarity).<ref>PMID:16908857</ref> <ref>PMID:17060607</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g8/2g87_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2g87 ConSurf].
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<div style="clear:both"></div>
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'''Crystallographic model of bathorhodopsin'''
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==See Also==
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*[[Rhodopsin 3D structures|Rhodopsin 3D structures]]
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== References ==
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==About this Structure==
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<references/>
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2G87 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2G87 OCA].
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__TOC__
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</StructureSection>
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==Reference==
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Crystallographic analysis of primary visual photochemistry., Nakamichi H, Okada T, Angew Chem Int Ed Engl. 2006 Jun 26;45(26):4270-3. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16586416 16586416]
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[[Category: Bos taurus]]
[[Category: Bos taurus]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Nakamichi, H.]]
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[[Category: Nakamichi, H]]
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[[Category: Okada, T.]]
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[[Category: Okada, T]]
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[[Category: ACE]]
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[[Category: G protein-coupled receptor]]
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[[Category: HG]]
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[[Category: Rhodopsin]]
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[[Category: HTG]]
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[[Category: Signaling protein]]
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[[Category: HTO]]
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[[Category: Visual pigment]]
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[[Category: PLM]]
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[[Category: RET]]
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[[Category: ZN]]
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[[Category: g protein-coupled receptor]]
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[[Category: rhodopsin]]
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[[Category: visual pigment]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:01:40 2008''
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Current revision

Crystallographic model of bathorhodopsin

PDB ID 2g87

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