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| ==Chlorella dUTPase== | | ==Chlorella dUTPase== |
- | <StructureSection load='3so2' size='340' side='right' caption='[[3so2]], [[Resolution|resolution]] 1.64Å' scene=''> | + | <StructureSection load='3so2' size='340' side='right'caption='[[3so2]], [[Resolution|resolution]] 1.64Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3so2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlorella_variabilis Chlorella variabilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SO2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SO2 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3so2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlorella_variabilis Chlorella variabilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SO2 FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CHLNCDRAFT_27939 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=554065 Chlorella variabilis])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6428Å</td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/dUTP_diphosphatase dUTP diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.23 3.6.1.23] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3so2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3so2 OCA], [https://pdbe.org/3so2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3so2 RCSB], [https://www.ebi.ac.uk/pdbsum/3so2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3so2 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3so2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3so2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3so2 RCSB], [http://www.ebi.ac.uk/pdbsum/3so2 PDBsum]</span></td></tr> | + | |
| </table> | | </table> |
- | <div style="background-color:#fffaf0;">
| + | == Function == |
- | == Publication Abstract from PubMed == | + | [https://www.uniprot.org/uniprot/E1ZRW6_CHLVA E1ZRW6_CHLVA] |
- | Deoxyuridine triphosphatase (dUTPase) is a ubiquitous enzyme that has been widely studied owing to its function and evolutionary significance. The gene coding for the dUTPase from the Chlorella alga was codon-optimized and synthesized. The synthetic gene was expressed in Escherichia coli and recombinant core Chlorella dUTPase (chdUTPase) was purified. Crystallization of chdUTPase was performed by the repetitive hanging-drop vapor-diffusion method at 298 K with ammonium sulfate as the precipitant. In the presence of 2'-deoxyuridine-5'-[(alpha,beta)-imido]triphosphate and magnesium, the enzyme produced die-shaped hexagonal R3 crystals with unit-cell parameters a = b = 66.9, c = 93.6 A, gamma = 120 degrees . X-ray diffraction data for chdUTPase were collected to 1.6 A resolution. The crystallization of chdUTPase with manganese resulted in very fragile clusters of needles.
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- | Crystallization of Chlorella deoxyuridine triphosphatase.,Badalucco L, Poudel I, Yamanishi M, Natarajan C, Moriyama H Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Dec 1;67(Pt 12):1599-602. , Epub 2011 Nov 26. PMID:22139176<ref>PMID:22139176</ref>
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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- | </div>
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- | == References ==
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- | <references/>
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| [[Category: Chlorella variabilis]] | | [[Category: Chlorella variabilis]] |
- | [[Category: DUTP diphosphatase]] | + | [[Category: Large Structures]] |
- | [[Category: Badalucco, L]] | + | [[Category: Badalucco L]] |
- | [[Category: Moriyama, H]] | + | [[Category: Moriyama H]] |
- | [[Category: Natarajan, c]] | + | [[Category: Natarajan c]] |
- | [[Category: Poudel, I]] | + | [[Category: Poudel I]] |
- | [[Category: Yamanishi, M]] | + | [[Category: Yamanishi M]] |
- | [[Category: Cancer marker]]
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- | [[Category: Chlorella]]
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- | [[Category: Deoxyuridine triphosphatase]]
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- | [[Category: Dutpase]]
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- | [[Category: Hydrolase]]
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