3skn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:26, 6 November 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the RL42 TCR unliganded==
==Crystal structure of the RL42 TCR unliganded==
-
<StructureSection load='3skn' size='340' side='right' caption='[[3skn]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
+
<StructureSection load='3skn' size='340' side='right'caption='[[3skn]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3skn]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SKN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3SKN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3skn]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SKN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SKN FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1mi5|1mi5]], [[1kgc|1kgc]], [[1m05|1m05]], [[3ffc|3ffc]], [[3sjv|3sjv]], [[3skm|3skm]], [[3sko|3sko]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3skn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3skn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3skn RCSB], [http://www.ebi.ac.uk/pdbsum/3skn PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3skn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3skn OCA], [https://pdbe.org/3skn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3skn RCSB], [https://www.ebi.ac.uk/pdbsum/3skn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3skn ProSAT]</span></td></tr>
</table>
</table>
 +
== Disease ==
 +
[https://www.uniprot.org/uniprot/TRAC_HUMAN TRAC_HUMAN] TCR-alpha-beta-positive T-cell deficiency. The disease is caused by variants affecting the gene represented in this entry.
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TRAC_HUMAN TRAC_HUMAN] Constant region of T cell receptor (TR) alpha chain (PubMed:24600447). Alpha-beta T cell receptors are antigen specific receptors which are essential to the immune response and are present on the cell surface of T lymphocytes. Recognize peptide-major histocompatibility (MH) (pMH) complexes that are displayed by antigen presenting cells (APC), a prerequisite for efficient T cell adaptive immunity against pathogens (PubMed:25493333). Binding of alpha-beta TR to pMH complex initiates TR-CD3 clustering on the cell surface and intracellular activation of LCK that phosphorylates the ITAM motifs of CD3G, CD3D, CD3E and CD247 enabling the recruitment of ZAP70. In turn, ZAP70 phosphorylates LAT, which recruits numerous signaling molecules to form the LAT signalosome. The LAT signalosome propagates signal branching to three major signaling pathways, the calcium, the mitogen-activated protein kinase (MAPK) kinase and the nuclear factor NF-kappa-B (NF-kB) pathways, leading to the mobilization of transcription factors that are critical for gene expression and essential for T cell growth and differentiation (PubMed:23524462). The T cell repertoire is generated in the thymus, by V-(D)-J rearrangement. This repertoire is then shaped by intrathymic selection events to generate a peripheral T cell pool of self-MH restricted, non-autoaggressive T cells. Post-thymic interaction of alpha-beta TR with the pMH complexes shapes TR structural and functional avidity (PubMed:15040585).<ref>PMID:15040585</ref> <ref>PMID:23524462</ref> <ref>PMID:24600447</ref> <ref>PMID:25493333</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 14: Line 19:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3skn" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[T-cell receptor|T-cell receptor]]
+
*[[T-cell receptor 3D structures|T-cell receptor 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 22: Line 28:
</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Burrows, S R]]
+
[[Category: Large Structures]]
-
[[Category: Chih, L Yu]]
+
[[Category: Burrows SR]]
-
[[Category: Gras, S]]
+
[[Category: Gras S]]
-
[[Category: Hanim, H]]
+
[[Category: Hanim H]]
-
[[Category: Kjer-Nielsen, L]]
+
[[Category: Kjer-Nielsen L]]
-
[[Category: Mccluskey, J]]
+
[[Category: Mccluskey J]]
-
[[Category: Purcell, A W]]
+
[[Category: Purcell AW]]
-
[[Category: Rossjohn, J]]
+
[[Category: Rossjohn J]]
-
[[Category: Wilmann, P G]]
+
[[Category: Wilmann PG]]
-
[[Category: Zhenjun, C]]
+
[[Category: Yu Chih L]]
-
[[Category: Immune system]]
+
[[Category: Zhenjun C]]
-
[[Category: T cell receptor]]
+

Current revision

Crystal structure of the RL42 TCR unliganded

PDB ID 3skn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools