4k8n

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:11, 30 October 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 18:1 Ceramide-1-Phosphate (18:1-C1P)==
==Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 18:1 Ceramide-1-Phosphate (18:1-C1P)==
-
<StructureSection load='4k8n' size='340' side='right' caption='[[4k8n]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
+
<StructureSection load='4k8n' size='340' side='right'caption='[[4k8n]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4k8n]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K8N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4K8N FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4k8n]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K8N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4K8N FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1Q0:(2S,3R,4Z)-3-HYDROXY-2-[(9E)-OCTADEC-9-ENOYLAMINO]OCTADEC-4-EN-1-YL+DIHYDROGEN+PHOSPHATE'>1Q0</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.102&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4k80|4k80]], [[4k84|4k84]], [[4k85|4k85]], [[4kbr|4kbr]], [[4kbs|4kbs]], [[4kf6|4kf6]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1Q0:(2S,3R,4Z)-3-HYDROXY-2-[(9E)-OCTADEC-9-ENOYLAMINO]OCTADEC-4-EN-1-YL+DIHYDROGEN+PHOSPHATE'>1Q0</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GLTPD1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4k8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k8n OCA], [https://pdbe.org/4k8n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4k8n RCSB], [https://www.ebi.ac.uk/pdbsum/4k8n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4k8n ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4k8n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k8n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4k8n RCSB], [http://www.ebi.ac.uk/pdbsum/4k8n PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CPTP_HUMAN CPTP_HUMAN] Mediates the intracellular transfer of ceramide-1-phosphate (C1P) between organelle membranes and the cell membrane. Required for normal structure of the Golgi stacks. Can bind phosphoceramides with a variety of aliphatic chains, but has a preference for lipids with saturated C16:0 or monounsaturated C18:1 aliphatic chains, and is inefficient with phosphoceramides containing lignoceryl (C24:0). Plays a role in the regulation of the cellular levels of ceramide-1-phosphate, and thereby contributes to the regulation of phospholipase PLA2G4A activity and the release of arachidonic acid. Has no activity with galactosylceramide, lactosylceramide, sphingomyelin, phosphatidylcholine, phosphatidic acid and ceramide. C1P transfer is stimulated by phosphatidylserine in C1P source vesicles (PubMed:28011644). Regulates autophagy, inflammasome mediated IL1B and IL18 processing, and pyroptosis, but not apoptosis (PubMed:29164996).<ref>PMID:23863933</ref> <ref>PMID:28011644</ref> <ref>PMID:29164996</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4k8n" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 21: Line 24:
</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Brown, R E]]
+
[[Category: Large Structures]]
-
[[Category: Patel, D J]]
+
[[Category: Brown RE]]
-
[[Category: Simanshu, D K]]
+
[[Category: Patel DJ]]
-
[[Category: C1p]]
+
[[Category: Simanshu DK]]
-
[[Category: Ceramide-1-phosphate]]
+
-
[[Category: Cptp]]
+
-
[[Category: Eicosanoid]]
+
-
[[Category: Gltp-fold]]
+
-
[[Category: Lipid transfer protein]]
+
-
[[Category: Lipid transport]]
+
-
[[Category: Protein-lipid complex]]
+

Current revision

Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 18:1 Ceramide-1-Phosphate (18:1-C1P)

PDB ID 4k8n

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools