4d8b

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==High resolution structure of monomeric S. progenies SpeB reveals role of glycine-rich active site loop==
==High resolution structure of monomeric S. progenies SpeB reveals role of glycine-rich active site loop==
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<StructureSection load='4d8b' size='340' side='right' caption='[[4d8b]], [[Resolution|resolution]] 1.06&Aring;' scene=''>
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<StructureSection load='4d8b' size='340' side='right'caption='[[4d8b]], [[Resolution|resolution]] 1.06&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4d8b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes Streptococcus pyogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D8B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4D8B FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4d8b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_ATCC_10782 Streptococcus pyogenes ATCC 10782]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D8B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D8B FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.058&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4d8e|4d8e]], [[4d8i|4d8i]], [[2uzj|2uzj]], [[1dki|1dki]], [[2jtc|2jtc]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HMPREF0841_0152, speB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1314 Streptococcus pyogenes])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d8b OCA], [https://pdbe.org/4d8b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d8b RCSB], [https://www.ebi.ac.uk/pdbsum/4d8b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d8b ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Streptopain Streptopain], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.10 3.4.22.10] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4d8b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d8b OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4d8b RCSB], [http://www.ebi.ac.uk/pdbsum/4d8b PDBsum]</span></td></tr>
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</table>
</table>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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Cysteine protease SpeB is secreted from Streptococcus pyogenes and has been studied as a potential virulence factor since its identification almost 70 years ago. Here, we report the crystal structures of apo mature SpeB to 1.06 Angstrom resolution as well as complexes with the general cysteine protease inhibitor E64 and a novel substrate mimetic peptide inhibitor. These structures uncover conformational changes associated with maturation of SpeB from the inactive zymogen to its active form and identify the residues required for substrate binding. With the use of a newly developed fluorogenic tri-peptide substrate to measure SpeB activity, we determined IC50 values for E64 and our new peptide inhibitor and the effects of mutations within the C-terminal, active-site loop. The structures and mutational analysis suggest conformational movements of the glycine-rich C-terminal loop are important for the recognition and recruitment of biological substrates and release of hydrolyzed products.
 
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Ultra-high and high resolution structures and mutational analysis of monomeric Streptococcus pyogenes SpeB reveal a functional role for the glycine-rich C-terminal loop.,Gonzalez-Paez GE, Wolan DW J Biol Chem. 2012 May 29. PMID:22645124<ref>PMID:22645124</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Streptococcus pyogenes]]
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[[Category: Large Structures]]
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[[Category: Streptopain]]
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[[Category: Streptococcus pyogenes ATCC 10782]]
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[[Category: Gonzalez, G E]]
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[[Category: Gonzalez GE]]
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[[Category: Wolan, D W]]
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[[Category: Wolan DW]]
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[[Category: Cysteine protease]]
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[[Category: Hydrolase]]
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[[Category: Papain fold]]
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[[Category: Secreted]]
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High resolution structure of monomeric S. progenies SpeB reveals role of glycine-rich active site loop

PDB ID 4d8b

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