This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4fib

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:50, 19 October 2022) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
 +
==Crystal structure of the ydhK protein from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR518A.==
==Crystal structure of the ydhK protein from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR518A.==
-
<StructureSection load='4fib' size='340' side='right' caption='[[4fib]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='4fib' size='340' side='right'caption='[[4fib]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4fib]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis Bacillus subtilis subsp. subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FIB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4FIB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4fib]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FIB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FIB FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ky9|2ky9]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4fib FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fib OCA], [https://pdbe.org/4fib PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4fib RCSB], [https://www.ebi.ac.uk/pdbsum/4fib PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4fib ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU05790, ydhK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=135461 Bacillus subtilis subsp. subtilis])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4fib FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4fib OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4fib RCSB], [http://www.ebi.ac.uk/pdbsum/4fib PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/YDHK_BACSU YDHK_BACSU]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus subtilis subsp. subtilis]]
+
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
-
[[Category: Abashidze, M]]
+
[[Category: Large Structures]]
-
[[Category: Acton, T B]]
+
[[Category: Abashidze M]]
-
[[Category: Cunningham, K]]
+
[[Category: Acton TB]]
-
[[Category: Everett, J K]]
+
[[Category: Cunningham K]]
-
[[Category: Hunt, J F]]
+
[[Category: Everett JK]]
-
[[Category: Maglaqui, M]]
+
[[Category: Hunt JF]]
-
[[Category: Mao, M]]
+
[[Category: Maglaqui M]]
-
[[Category: Montelione, G T]]
+
[[Category: Mao M]]
-
[[Category: Structural genomic]]
+
[[Category: Montelione GT]]
-
[[Category: Owens, L A]]
+
[[Category: Owens LA]]
-
[[Category: Seetharaman, J]]
+
[[Category: Seetharaman J]]
-
[[Category: Tong, L]]
+
[[Category: Tong L]]
-
[[Category: Vorobiev, S]]
+
[[Category: Vorobiev S]]
-
[[Category: Xiao, R]]
+
[[Category: Xiao R]]
-
[[Category: Zhao, L]]
+
[[Category: Zhao L]]
-
[[Category: Duf1541]]
+
-
[[Category: Nesg]]
+
-
[[Category: Pf07563]]
+
-
[[Category: Psi-biology]]
+
-
[[Category: Sr518a]]
+
-
[[Category: Unknown function]]
+
-
[[Category: Ydhk]]
+

Current revision

Crystal structure of the ydhK protein from Bacillus subtilis. Northeast Structural Genomics Consortium Target SR518A.

PDB ID 4fib

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools