4n6d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:31, 1 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio salexigens DSM2638 (Desal_3247), Target EFI-510112, phased with I3C, open complex, C-terminus of symmetry mate bound in ligand binding site==
==Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio salexigens DSM2638 (Desal_3247), Target EFI-510112, phased with I3C, open complex, C-terminus of symmetry mate bound in ligand binding site==
-
<StructureSection load='4n6d' size='340' side='right' caption='[[4n6d]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+
<StructureSection load='4n6d' size='340' side='right'caption='[[4n6d]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4n6d]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_salexigens_dsm_2638 Desulfovibrio salexigens dsm 2638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N6D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N6D FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4n6d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Maridesulfovibrio_salexigens_DSM_2638 Maridesulfovibrio salexigens DSM 2638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N6D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4N6D FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=I3C:5-AMINO-2,4,6-TRIIODOBENZENE-1,3-DICARBOXYLIC+ACID'>I3C</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.701&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Desal_3247 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=526222 Desulfovibrio salexigens DSM 2638])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=I3C:5-AMINO-2,4,6-TRIIODOBENZENE-1,3-DICARBOXYLIC+ACID'>I3C</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n6d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4n6d RCSB], [http://www.ebi.ac.uk/pdbsum/4n6d PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4n6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n6d OCA], [https://pdbe.org/4n6d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4n6d RCSB], [https://www.ebi.ac.uk/pdbsum/4n6d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4n6d ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/C6C297_MARSD C6C297_MARSD]
 +
 +
==See Also==
 +
*[[TRAP dicarboxylate transporter%2C DctP subunit|TRAP dicarboxylate transporter%2C DctP subunit]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Desulfovibrio salexigens dsm 2638]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Maridesulfovibrio salexigens DSM 2638]]
-
[[Category: Attonito, J D]]
+
[[Category: Al Obaidi NF]]
-
[[Category: Chowdhury, S]]
+
[[Category: Almo SC]]
-
[[Category: EFI, Enzyme Function Initiative]]
+
[[Category: Attonito JD]]
-
[[Category: Evans, B]]
+
[[Category: Chowdhury S]]
-
[[Category: Gerlt, J A]]
+
[[Category: Evans B]]
-
[[Category: Glenn, A Scott]]
+
[[Category: Gerlt JA]]
-
[[Category: Hillerich, B]]
+
[[Category: Hillerich B]]
-
[[Category: Imker, H J]]
+
[[Category: Imker HJ]]
-
[[Category: Love, J]]
+
[[Category: Love J]]
-
[[Category: Obaidi, N F.Al]]
+
[[Category: Scott Glenn A]]
-
[[Category: Seidel, R D]]
+
[[Category: Seidel RD]]
-
[[Category: Stead, M]]
+
[[Category: Stead M]]
-
[[Category: Vetting, M W]]
+
[[Category: Vetting MW]]
-
[[Category: Efi]]
+
-
[[Category: Enzyme function initiative]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transport protein]]
+
-
[[Category: Trap periplasmic solute binding family]]
+

Current revision

Crystal structure of a TRAP periplasmic solute binding protein from Desulfovibrio salexigens DSM2638 (Desal_3247), Target EFI-510112, phased with I3C, open complex, C-terminus of symmetry mate bound in ligand binding site

PDB ID 4n6d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools