4k0u

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:26, 8 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Pilotin/secretin peptide Complex==
==Pilotin/secretin peptide Complex==
-
<StructureSection load='4k0u' size='340' side='right' caption='[[4k0u]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
+
<StructureSection load='4k0u' size='340' side='right'caption='[[4k0u]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4k0u]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Dickeya_dadantii_3937 Dickeya dadantii 3937]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3uym 3uym]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K0U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4K0U FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4k0u]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Dickeya_dadantii_3937 Dickeya dadantii 3937]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3uym 3uym]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K0U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4K0U FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3utk|3utk]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Dda3937_02411, outS, OutS Dda3937_02411 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198628 Dickeya dadantii 3937])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4k0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k0u OCA], [https://pdbe.org/4k0u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4k0u RCSB], [https://www.ebi.ac.uk/pdbsum/4k0u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4k0u ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4k0u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k0u OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4k0u RCSB], [http://www.ebi.ac.uk/pdbsum/4k0u PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/OUTS_DICD3 OUTS_DICD3]] Out proteins are required for the translocation of pectate lyases and cellulases across the outer membrane. [[http://www.uniprot.org/uniprot/GSPD2_DICD3 GSPD2_DICD3]] Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of the multiple pectic enzymes.
+
[https://www.uniprot.org/uniprot/OUTS_DICD3 OUTS_DICD3] Out proteins are required for the translocation of pectate lyases and cellulases across the outer membrane.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
-
Gram-negative bacteria secrete virulence factors and assemble fibre structures on their cell surface using specialized secretion systems. Three of these, T2SS, T3SS and T4PS, are characterized by large outer membrane channels formed by proteins called secretins. Usually, a cognate lipoprotein pilot is essential for the assembly of the secretin in the outer membrane. The structures of the pilotins of the T3SS and T4PS have been described. However in the T2SS, the molecular mechanism of this process is poorly understood and its structural basis is unknown. Here we report the crystal structure of the pilotin of the T2SS that comprises an arrangement of four alpha-helices profoundly different from previously solved pilotins from the T3SS and T4P and known four alpha-helix bundles. The architecture can be described as the insertion of one alpha-helical hairpin into a second open alpha-helical hairpin with bent final helix. NMR, CD and fluorescence spectroscopy show that the pilotin binds tightly to 18 residues close to the C-terminus of the secretin. These residues, unstructured before binding to the pilotin, become helical on binding. Data collected from crystals of the complex suggests how the secretin peptide binds to the pilotin and further experiments confirm the importance of these C-terminal residues in vivo.
+
The secretins are a family of large multimeric channels in the outer membrane of Gram-negative bacteria that are involved in protein export. In Dickeya dadantii and many other pathogenic bacteria, the lipoprotein pilotin targets the secretin subunits to the outer membrane, allowing a functional type II secretion system to be assembled. Here, the crystal structure of the C-terminal peptide of the secretin subunit bound to its cognate pilotin is reported. In solution, this C-terminal region of the secretin is nonstructured. The secretin peptide folds on binding to the pilotin to form just under four turns of alpha-helix which bind tightly up against the first helix of the pilotin so that the hydrophobic residues of the secretin helix can bind to the hydrophobic surface of the pilotin. The secretin helix binds parallel to the first part of the fourth helix of the pilotin. An N-capping aspartate encourages helix formation and binding by interacting favourably with the helix dipole of the helical secretin peptide. The structure of the secretin-pilotin complex of the phytopathogenic D. dadantii described here is a paradigm for this interaction in the OutS-PulS family of pilotins, which is essential for the correct assembly of the type II secretion system of several potent human adversaries, including enterohaemorrhagic Escherichia coli and Klebsiella oxytoca.
-
Structural and functional insights into the pilotin-secretin complex of the type II secretion system.,Gu S, Rehman S, Wang X, Shevchik VE, Pickersgill RW PLoS Pathog. 2012 Feb;8(2):e1002531. Epub 2012 Feb 9. PMID:22346756<ref>PMID:22346756</ref>
+
Anatomy of secretin binding to the Dickeya dadantii type II secretion system pilotin.,Rehman S, Gu S, Shevchik VE, Pickersgill RW Acta Crystallogr D Biol Crystallogr. 2013 Aug;69(Pt 8):1381-6. doi:, 10.1107/S0907444913007658. Epub 2013 Jul 13. PMID:23897461<ref>PMID:23897461</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4k0u" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 22: Line 23:
</StructureSection>
</StructureSection>
[[Category: Dickeya dadantii 3937]]
[[Category: Dickeya dadantii 3937]]
-
[[Category: Pickersgill, R W]]
+
[[Category: Large Structures]]
-
[[Category: Rehman, S]]
+
[[Category: Pickersgill RW]]
-
[[Category: Dickeya dadantii]]
+
[[Category: Rehman S]]
-
[[Category: Outer membrane]]
+
-
[[Category: Pilotin-secretin complex]]
+
-
[[Category: Protein transport]]
+
-
[[Category: Type ii secretion system]]
+

Current revision

Pilotin/secretin peptide Complex

PDB ID 4k0u

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools