3wom

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:19, 8 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the DAP BII dipeptide complex II==
==Crystal structure of the DAP BII dipeptide complex II==
-
<StructureSection load='3wom' size='340' side='right' caption='[[3wom]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
+
<StructureSection load='3wom' size='340' side='right'caption='[[3wom]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3wom]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WOM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WOM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3wom]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoxanthomonas_mexicana Pseudoxanthomonas mexicana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WOM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WOM FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene>, <scene name='pdbligand=VAL:VALINE'>VAL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3woi|3woi]], [[3woj|3woj]], [[3wok|3wok]], [[3wol|3wol]], [[3won|3won]], [[3woo|3woo]], [[3wop|3wop]], [[3woq|3woq]], [[3wor|3wor]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=TYR:TYROSINE'>TYR</scene>, <scene name='pdbligand=VAL:VALINE'>VAL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wom FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wom OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3wom RCSB], [http://www.ebi.ac.uk/pdbsum/3wom PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wom FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wom OCA], [https://pdbe.org/3wom PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wom RCSB], [https://www.ebi.ac.uk/pdbsum/3wom PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wom ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DAPB2_PSEMX DAPB2_PSEMX] Exopeptidase that catalyzes the removal of dipeptide units (NH2-P2-P1-) from the free amino termini of oligopeptides and small proteins (PubMed:24598890, PubMed:8892831, PubMed:24827749). Peptide digestion is sequential and substrate recognition is non-specific, with the exception that Pro is not suitable as a P1 residue (PubMed:24827749). Removes many residues of bioactive oligopeptides such as angiotensin I and neuromedin N and cleaves also oxidized insulin B chain. Able to hydrolyze an X-Pro bond, an imido bond. No endopeptidase activity (PubMed:8892831). May play a physiological role in feeding (PubMed:24598890).<ref>PMID:24598890</ref> <ref>PMID:24827749</ref> <ref>PMID:8892831</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 15: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3wom" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Fujimoto, M]]
+
[[Category: Large Structures]]
-
[[Category: Iizuka, I]]
+
[[Category: Pseudoxanthomonas mexicana]]
-
[[Category: Nonaka, T]]
+
[[Category: Fujimoto M]]
-
[[Category: Ogasawara, W]]
+
[[Category: Iizuka I]]
-
[[Category: Roppongi, S]]
+
[[Category: Nonaka T]]
-
[[Category: Sakamoto, Y]]
+
[[Category: Ogasawara W]]
-
[[Category: Suzuki, Y]]
+
[[Category: Roppongi S]]
-
[[Category: Tanaka, N]]
+
[[Category: Sakamoto Y]]
-
[[Category: Tateoka, C]]
+
[[Category: Suzuki Y]]
-
[[Category: Chymotrypsin fold]]
+
[[Category: Tanaka N]]
-
[[Category: Hydrolase]]
+
[[Category: Tateoka C]]

Current revision

Crystal structure of the DAP BII dipeptide complex II

PDB ID 3wom

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools