This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2i9h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:29, 9 May 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2i9h.jpg|left|200px]]
 
-
{{Structure
+
==NMR solution structure of the reduced form of thioredoxin 1 from yeast (Trx1)==
-
|PDB= 2i9h |SIZE=350|CAPTION= <scene name='initialview01'>2i9h</scene>
+
<StructureSection load='2i9h' size='340' side='right'caption='[[2i9h]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2i9h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I9H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I9H FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE= TRX1, TRX2, YLR043C ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 Saccharomyces cerevisiae])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i9h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i9h OCA], [https://pdbe.org/2i9h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i9h RCSB], [https://www.ebi.ac.uk/pdbsum/2i9h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i9h ProSAT]</span></td></tr>
-
}}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/TRX1_YEAST TRX1_YEAST]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i9/2i9h_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i9h ConSurf].
 +
<div style="clear:both"></div>
-
'''NMR solution structure of the reduced form of thioredoxin 1 from yeast (Trx1)'''
+
==See Also==
-
 
+
*[[Thioredoxin 3D structures|Thioredoxin 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2I9H is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I9H OCA].
+
[[Category: Large Structures]]
-
 
+
-
==Reference==
+
-
NMR solution structure of the reduced form of thioredoxin 1 from Sacharomyces cerevisiae., Pinheiro AS, Amorim GC, Netto LE, Almeida FC, Valente AP, Proteins. 2008 Feb 1;70(2):584-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17932921 17932921]
+
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Single protein]]
+
[[Category: Almeida FCL]]
-
[[Category: Almeida, F C.L.]]
+
[[Category: Amorim GC]]
-
[[Category: Amorim, G C.]]
+
[[Category: Pinheiro AS]]
-
[[Category: Pinheiro, A S.]]
+
[[Category: Valente AP]]
-
[[Category: Valente, A P.]]
+
-
[[Category: oxidoreductase]]
+
-
[[Category: oxireductase]]
+
-
[[Category: thioredoxin]]
+
-
[[Category: yeast]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:26:51 2008''
+

Current revision

NMR solution structure of the reduced form of thioredoxin 1 from yeast (Trx1)

PDB ID 2i9h

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools