2ibd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:03, 21 November 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ibd.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of Probable transcriptional regulatory protein RHA5900==
-
|PDB= 2ibd |SIZE=350|CAPTION= <scene name='initialview01'>2ibd</scene>, resolution 1.50&Aring;
+
<StructureSection load='2ibd' size='340' side='right'caption='[[2ibd]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene>
+
<table><tr><td colspan='2'>[[2ibd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IBD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IBD FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
|GENE= RHA1_ro04598 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1831 Rhodococcus sp.])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ibd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ibd OCA], [https://pdbe.org/2ibd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ibd RCSB], [https://www.ebi.ac.uk/pdbsum/2ibd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ibd ProSAT], [https://www.topsan.org/Proteins/MCSG/2ibd TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of Probable transcriptional regulatory protein RHA5900'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2IBD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_sp. Rhodococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IBD OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ib/2ibd_consurf.spt"</scriptWhenChecked>
-
[[Category: Rhodococcus sp.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Chang, C.]]
+
</jmolCheckbox>
-
[[Category: Edwards, A M.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ibd ConSurf].
-
[[Category: Evdokimova, E.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: Kagan, O.]]
+
</StructureSection>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Large Structures]]
-
[[Category: Savchenko, A.]]
+
[[Category: Rhodococcus jostii RHA1]]
-
[[Category: MG]]
+
[[Category: Chang C]]
-
[[Category: mcsg]]
+
[[Category: Edwards AM]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Evdokimova E]]
-
[[Category: probable transcriptional regulatory protein]]
+
[[Category: Joachimiak A]]
-
[[Category: protein structure initiative]]
+
[[Category: Kagan O]]
-
[[Category: psi-2]]
+
[[Category: Savchenko A]]
-
[[Category: rhodococcus sp. rha1]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:27:30 2008''
+

Current revision

Crystal structure of Probable transcriptional regulatory protein RHA5900

PDB ID 2ibd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools