2icu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:12, 30 October 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2icu.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of Hypothetical Protein YedK From Escherichia coli==
-
|PDB= 2icu |SIZE=350|CAPTION= <scene name='initialview01'>2icu</scene>, resolution 1.60&Aring;
+
<StructureSection load='2icu' size='340' side='right'caption='[[2icu]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2icu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ICU FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
|GENE= yedK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2icu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2icu OCA], [https://pdbe.org/2icu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2icu RCSB], [https://www.ebi.ac.uk/pdbsum/2icu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2icu ProSAT], [https://www.topsan.org/Proteins/SECSG/2icu TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal Structure of Hypothetical Protein YedK From Escherichia coli'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/YEDK_ECOLI YEDK_ECOLI]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2ICU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ICU OCA].
+
Check<jmol>
-
[[Category: Escherichia coli]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ic/2icu_consurf.spt"</scriptWhenChecked>
-
[[Category: Chen, L.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Ebihara, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Initiative, Riken Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Li, Y.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2icu ConSurf].
-
[[Category: Liu, Z J.]]
+
<div style="clear:both"></div>
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
__TOC__
-
[[Category: Rose, J.]]
+
</StructureSection>
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Wang, B C.]]
+
[[Category: Large Structures]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Chen L]]
-
[[Category: Zhao, M.]]
+
[[Category: Ebihara A]]
-
[[Category: hypothetical protein yedk]]
+
[[Category: Li Y]]
-
[[Category: protein structure initiative]]
+
[[Category: Liu ZJ]]
-
[[Category: psi]]
+
[[Category: Structural genomic]]
-
[[Category: riken]]
+
[[Category: Rose J]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Wang BC]]
-
[[Category: rsgi]]
+
[[Category: Yokoyama S]]
-
[[Category: secsg]]
+
[[Category: Zhao M]]
-
[[Category: southeast collaboratory for structural genomic]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:27:57 2008''
+

Current revision

Crystal Structure of Hypothetical Protein YedK From Escherichia coli

PDB ID 2icu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools