Sandbox Reserved 974

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==Structure of monomeric NT from Euprosthenops australis Major Ampullate Spidroin 1 (MaSp1)==
==Structure of monomeric NT from Euprosthenops australis Major Ampullate Spidroin 1 (MaSp1)==
<StructureSection load='4fbs' size='340' side='right' caption='Caption for this structure' scene=''>
<StructureSection load='4fbs' size='340' side='right' caption='Caption for this structure' scene=''>
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In the silk glands of the spiders, the silk precursors is contained in liquid form and became solid when it is excreted. The dimerization of the N-terminal domain of MaSp1 involved the transition from the liquid form to the solid silk.
== Function ==
== Function ==
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MaSp1 is one of the proteins which composed the spider silk. The N-terminal domain (NT) is important to change from the soluble conformation of MaSp1 to the insoluble of this protein. In the soluble conformation the most important secondary structure is α-helix, in the insoluble conformation the protein is mostly composed of β-sheets. Dimerization of NT create fiber of spider silk and the changing conformation from α-helix to β-sheets make the spider silk insoluble. The dimerization of NT is induced by the lowering of pH from 7 to 6.
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MaSp1 is one of the proteins which composed the spider silk. The N-terminal domain (NT) is important to change from the soluble conformation of MaSp1 to the insoluble of this protein. In the soluble conformation the most important secondary structure is α-helix, in the insoluble conformation the protein is mostly composed of β-sheets. Dimerization of NT create fiber of spider silk and the changing conformation from α-helix to β-sheets make the spider silk insoluble. The dimerization of NT is induced by the lowering of pH from 7 to 6.
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== Relevance ==
== Relevance ==
Understand the polymerization of spider silks is important to produce this ''in vitro'' and in great quantity. Indeed the militaty and biomedical fields need spider silks to develop different product like bullet proof vest, artifical bones and artifical ligament.
Understand the polymerization of spider silks is important to produce this ''in vitro'' and in great quantity. Indeed the militaty and biomedical fields need spider silks to develop different product like bullet proof vest, artifical bones and artifical ligament.
== Structural highlights ==
== Structural highlights ==
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For the monomeric NT helix 2 and helix 3 forme a subunit and helix 1,4 and 5 forme a second subunit. There is a rotation of 16° between the subunits to create an open five-helix. In the dimeric NT helix 2,3 and 5 create a subunits, this changing of conformation is mostly induced by the burial of <scene name='60/604493/Tryptophane10/1'>tryptophan 10</scene>. So this amino acid go from hydophobic environment to hydrophilic environment. This conformation is stablized by the interaction of D40 (the beginning of helix 2) and E84 (at the end of helix 3). This interaction is impossible in monomeric NT because the two amino acids are separate by more of 10 Å. Also the protonation of E79 and E119 is most important event to pass from the monomeric form to the dimeric form between pH 6 and 7. But if the pH lowering too much (below pH 4) D40 will be protonated and this destablize the dimer.
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For the monomeric NT helix 2 and helix 3 forme a subunit and helix 1,4 and 5 forme a second subunit. There is a rotation of 16° between the subunits to create an open five-helix. In the dimeric NT helix 2,3 and 5 create a subunits, this changing of conformation is mostly induced by the burial of <scene name='60/604493/Tryptophane10/1'>tryptophan 10</scene>. So this amino acid go from hydophobic environment to hydrophilic environment. This conformation is stablized by the interaction of <scene name='60/604493/Aspartate40/1'>Aspartic acid 40</scene> (the beginning of helix 2) and glutamic acid 84 (at the end of helix 3). This interaction is impossible in monomeric NT because the two amino acids are separate by more of 10 Å. Also the protonation of <scene name='60/604493/Aspartate79-119/1'>aspartic acids 79 and 119</scene> is most important event to pass from the monomeric form to the dimeric form between pH 6 and 7. But if the pH lowering too much (below pH 4) <scene name='60/604493/Aspartate40/1'>Aspartic acid 40</scene> will be protonated and this destablize the dimer.
<scene name='60/604493/Tryptophane10/1'>Tryptophan 10</scene> is very conserverved in most of the species but it can be repleased by phenylalanin.
<scene name='60/604493/Tryptophane10/1'>Tryptophan 10</scene> is very conserverved in most of the species but it can be repleased by phenylalanin.
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<scene name='60/604493/Arginine72/1'>arginine 72</scene>
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</StructureSection>
</StructureSection>
== References ==
== References ==
<references/>
<references/>
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[pH-dependent dimerization of spider silk N-terminal domain requires relocation of a wedged tryptophan side chain.]
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pH-dependent dimerization of spider silk N-terminal domain requires relocation of a wedged tryptophan side chain: http://www.ncbi.nlm.nih.gov/pubmed/22706024
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http://www.ncbi.nlm.nih.gov/pubmed/22706024
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Current revision

This Sandbox is Reserved from 15/11/2014, through 15/05/2015 for use in the course "Biomolecule" taught by Bruno Kieffer at the Strasbourg University. This reservation includes Sandbox Reserved 951 through Sandbox Reserved 975.
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Structure of monomeric NT from Euprosthenops australis Major Ampullate Spidroin 1 (MaSp1)

Caption for this structure

Drag the structure with the mouse to rotate

References

pH-dependent dimerization of spider silk N-terminal domain requires relocation of a wedged tryptophan side chain: http://www.ncbi.nlm.nih.gov/pubmed/22706024

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