This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2bv2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:56, 13 December 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
==BETA GAMMA CRYSTALLIN FROM CIONA INTESTINALIS==
+
 
-
<StructureSection load='2bv2' size='340' side='right' caption='[[2bv2]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
+
==beta gamma crystallin from Ciona Intestinalis==
 +
<StructureSection load='2bv2' size='340' side='right'caption='[[2bv2]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2bv2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ciona_intestinalis Ciona intestinalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BV2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BV2 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2bv2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ciona_intestinalis Ciona intestinalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BV2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BV2 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bv2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bv2 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bv2 RCSB], [http://www.ebi.ac.uk/pdbsum/2bv2 PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bv2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bv2 OCA], [https://pdbe.org/2bv2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bv2 RCSB], [https://www.ebi.ac.uk/pdbsum/2bv2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bv2 ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 10: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/2bv2_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/2bv2_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bv2 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 24: Line 26:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2bv2" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Crystallin 3D structures|Crystallin 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 29: Line 35:
</StructureSection>
</StructureSection>
[[Category: Ciona intestinalis]]
[[Category: Ciona intestinalis]]
-
[[Category: Bateman, O A]]
+
[[Category: Large Structures]]
-
[[Category: Dirks, R P.H]]
+
[[Category: Bateman OA]]
-
[[Category: Lubsen, N H]]
+
[[Category: Dirks RPH]]
-
[[Category: Purkiss, A G]]
+
[[Category: Lubsen NH]]
-
[[Category: Shimeld, S M]]
+
[[Category: Purkiss AG]]
-
[[Category: Slingsby, C]]
+
[[Category: Shimeld SM]]
-
[[Category: Ascidian]]
+
[[Category: Slingsby C]]
-
[[Category: Calcium binding]]
+
-
[[Category: Chordate]]
+
-
[[Category: Crystallin]]
+
-
[[Category: Eye lens]]
+
-
[[Category: Spherulin]]
+

Current revision

beta gamma crystallin from Ciona Intestinalis

PDB ID 2bv2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools