2dck
From Proteopedia
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==A tetragonal-lattice structure of alkaliphilic XynJ from Bacillus sp. 41M-1== | ==A tetragonal-lattice structure of alkaliphilic XynJ from Bacillus sp. 41M-1== | ||
| - | <StructureSection load='2dck' size='340' side='right' caption='[[2dck]], [[Resolution|resolution]] 2.10Å' scene=''> | + | <StructureSection load='2dck' size='340' side='right'caption='[[2dck]], [[Resolution|resolution]] 2.10Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2dck]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2dck]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._41M-1 Bacillus sp. 41M-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DCK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DCK FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | |
| - | <tr id=' | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dck FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dck OCA], [https://pdbe.org/2dck PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dck RCSB], [https://www.ebi.ac.uk/pdbsum/2dck PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dck ProSAT]</span></td></tr> |
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| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q9RC94_9BACI Q9RC94_9BACI] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dck_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/2dck_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dck ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Bacillus sp]] | + | [[Category: Bacillus sp. 41M-1]] |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Fibriansah | + | [[Category: Fibriansah G]] |
[[Category: Ihsanawati]] | [[Category: Ihsanawati]] | ||
| - | [[Category: Kumasaka | + | [[Category: Kumasaka T]] |
| - | [[Category: Nakamura | + | [[Category: Nakamura S]] |
| - | [[Category: Tanaka | + | [[Category: Tanaka N]] |
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Current revision
A tetragonal-lattice structure of alkaliphilic XynJ from Bacillus sp. 41M-1
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