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- | [[Image:2jpz.gif|left|200px]] | |
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- | {{Structure
| + | ==Human telomere DNA quadruplex structure in K+ solution hybrid-2 form== |
- | |PDB= 2jpz |SIZE=350|CAPTION= <scene name='initialview01'>2jpz</scene>
| + | <StructureSection load='2jpz' size='340' side='right'caption='[[2jpz]]' scene=''> |
- | |SITE=
| + | == Structural highlights == |
- | |LIGAND=
| + | <table><tr><td colspan='2'>[[2jpz]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JPZ FirstGlance]. <br> |
- | |ACTIVITY=
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
- | |GENE=
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jpz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jpz OCA], [https://pdbe.org/2jpz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jpz RCSB], [https://www.ebi.ac.uk/pdbsum/2jpz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jpz ProSAT]</span></td></tr> |
- | }}
| + | </table> |
- | | + | __TOC__ |
- | '''Structure of the hybrid-2 type intramolecular human telomeric G-quadruplex''' | + | </StructureSection> |
- | | + | [[Category: Large Structures]] |
- | | + | [[Category: Carver M]] |
- | ==Overview== | + | [[Category: Dai J]] |
- | Formation of the G-quadruplex in the human telomeric sequence can inhibit the activity of telomerase, thus the intramolecular telomeric G-quadruplexes have been considered as an attractive anticancer target. Information of intramolecular telomeric G-quadruplex structures formed under physiological conditions is important for structure-based drug design. Here, we report the first structure of the major intramolecular G-quadruplex formed in a native, non-modified human telomeric sequence in K(+) solution. This is a hybrid-type mixed parallel/antiparallel-G-stranded G-quadruplex, one end of which is covered by a novel T:A:T triple capping structure. This structure (Hybrid-2) and the previously reported Hybrid-1 structure differ in their loop arrangements, strand orientations and capping structures. The distinct capping structures appear to be crucial for the favored formation of the specific hybrid-type intramolecular telomeric G-quadruplexes, and may provide specific binding sites for drug targeting. Our study also shows that while the hybrid-type G-quadruplexes appear to be the major conformations in K(+) solution, human telomeric sequences are always in equilibrium between Hybrid-1 and Hybrid-2 structures, which is largely determined by the 3'-flanking sequence. Furthermore, both hybrid-type G-quadruplexes suggest a straightforward means for multimer formation with effective packing in the human telomeric sequence and provide important implications for drug targeting of G-quadruplexes in human telomeres.
| + | [[Category: Jones R]] |
- | | + | [[Category: Punchihewa C]] |
- | ==About this Structure== | + | [[Category: Yang D]] |
- | 2JPZ is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JPZ OCA].
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- | ==Reference==
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- | Structure of the Hybrid-2 type intramolecular human telomeric G-quadruplex in K+ solution: insights into structure polymorphism of the human telomeric sequence., Dai J, Carver M, Punchihewa C, Jones RA, Yang D, Nucleic Acids Res. 2007;35(15):4927-40. Epub 2007 Jul 10. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17626043 17626043]
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- | [[Category: Protein complex]] | + | |
- | [[Category: Carver, M.]] | + | |
- | [[Category: Dai, J.]] | + | |
- | [[Category: Jones, R.]] | + | |
- | [[Category: Punchihewa, C.]] | + | |
- | [[Category: Yang, D.]] | + | |
- | [[Category: dna]]
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- | [[Category: human telomeric sequence]]
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- | [[Category: nmr]]
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- | [[Category: quadruplex]]
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- | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:44:07 2008''
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