2p5r
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of the poplar glutathione peroxidase 5 in the oxidized form== | ==Crystal structure of the poplar glutathione peroxidase 5 in the oxidized form== | ||
| - | <StructureSection load='2p5r' size='340' side='right' caption='[[2p5r]], [[Resolution|resolution]] 2.45Å' scene=''> | + | <StructureSection load='2p5r' size='340' side='right'caption='[[2p5r]], [[Resolution|resolution]] 2.45Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2p5r]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2p5r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Populus_trichocarpa_x_Populus_deltoides Populus trichocarpa x Populus deltoides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P5R FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p5r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p5r OCA], [https://pdbe.org/2p5r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p5r RCSB], [https://www.ebi.ac.uk/pdbsum/2p5r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p5r ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A3FNZ8_9ROSI A3FNZ8_9ROSI] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p5/2p5r_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p5/2p5r_consurf.spt"</scriptWhenChecked> |
| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p5r ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
| Line 26: | Line 28: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2p5r" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| Line 33: | Line 36: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Populus trichocarpa x | + | [[Category: Large Structures]] |
| - | [[Category: Aubry | + | [[Category: Populus trichocarpa x Populus deltoides]] |
| - | [[Category: Corbier | + | [[Category: Aubry A]] |
| - | [[Category: Didierjean | + | [[Category: Corbier C]] |
| - | [[Category: Jacquot | + | [[Category: Didierjean C]] |
| - | [[Category: Koh | + | [[Category: Jacquot J-P]] |
| - | [[Category: Mulliert | + | [[Category: Koh CS]] |
| - | [[Category: Navrot | + | [[Category: Mulliert G]] |
| - | [[Category: Panjikar | + | [[Category: Navrot N]] |
| - | [[Category: Rouhier | + | [[Category: Panjikar S]] |
| - | [[Category: Shawkataly | + | [[Category: Rouhier N]] |
| - | + | [[Category: Shawkataly O]] | |
| - | + | ||
Current revision
Crystal structure of the poplar glutathione peroxidase 5 in the oxidized form
| |||||||||||
