This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2npm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:18, 30 August 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==crystal structure of Cryptosporidium parvum 14-3-3 protein in complex with peptide==
==crystal structure of Cryptosporidium parvum 14-3-3 protein in complex with peptide==
-
<StructureSection load='2npm' size='340' side='right' caption='[[2npm]], [[Resolution|resolution]] 2.52&Aring;' scene=''>
+
<StructureSection load='2npm' size='340' side='right'caption='[[2npm]], [[Resolution|resolution]] 2.52&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2npm]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cryptosporidium_parvum Cryptosporidium parvum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NPM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NPM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2npm]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Cryptosporidium_parvum Cryptosporidium parvum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NPM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NPM FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.52&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cgd3_1290 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5807 Cryptosporidium parvum])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2npm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2npm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2npm RCSB], [http://www.ebi.ac.uk/pdbsum/2npm PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2npm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2npm OCA], [https://pdbe.org/2npm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2npm RCSB], [https://www.ebi.ac.uk/pdbsum/2npm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2npm ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5CUW0_CRYPI Q5CUW0_CRYPI]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/np/2npm_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/np/2npm_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2npm ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 25: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2npm" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 30: Line 34:
</StructureSection>
</StructureSection>
[[Category: Cryptosporidium parvum]]
[[Category: Cryptosporidium parvum]]
-
[[Category: Arrowsmith, C H]]
+
[[Category: Large Structures]]
-
[[Category: Bochkarev, A]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Brokx, S]]
+
[[Category: Bochkarev A]]
-
[[Category: Dong, A]]
+
[[Category: Brokx S]]
-
[[Category: Doyle, D]]
+
[[Category: Dong A]]
-
[[Category: Edwards, A M]]
+
[[Category: Doyle D]]
-
[[Category: Hassanali, A]]
+
[[Category: Edwards AM]]
-
[[Category: Hui, R]]
+
[[Category: Hassanali A]]
-
[[Category: Koeieradzki, I]]
+
[[Category: Hui R]]
-
[[Category: Lew, J]]
+
[[Category: Koeieradzki I]]
-
[[Category: Lin, L]]
+
[[Category: Lew J]]
-
[[Category: Qiu, W]]
+
[[Category: Lin L]]
-
[[Category: Ren, H]]
+
[[Category: Qiu W]]
-
[[Category: Structural genomic]]
+
[[Category: Ren H]]
-
[[Category: Sundstrom, M]]
+
[[Category: Sundstrom M]]
-
[[Category: Vedadi, M]]
+
[[Category: Vedadi M]]
-
[[Category: Wasney, G]]
+
[[Category: Wasney G]]
-
[[Category: Weigelt, J]]
+
[[Category: Weigelt J]]
-
[[Category: Zhao, Y]]
+
[[Category: Zhao Y]]
-
[[Category: Cell regulator protein 14-3-3]]
+
-
[[Category: Protein binding]]
+
-
[[Category: Sgc]]
+

Current revision

crystal structure of Cryptosporidium parvum 14-3-3 protein in complex with peptide

PDB ID 2npm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2npm"
Personal tools