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1akw

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[[Image:1akw.gif|left|200px]]<br />
 
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<applet load="1akw" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1akw, resolution 1.75&Aring;" />
 
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'''G61L OXIDIZED FLAVODOXIN MUTANT'''<br />
 
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==Overview==
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==G61L OXIDIZED FLAVODOXIN MUTANT==
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Mutants of the electron-transfer protein flavodoxin from Desulfovibrio, vulgaris were made by site-directed mutagenesis to investigate the role of, glycine-61 in stabilizing the semiquinone of FMN by the protein and in, controlling the flavin redox potentials. The spectroscopic properties, oxidation-reduction potentials, and flavin-binding properties of the, mutant proteins, G61A/N/V and L, were compared with those of wild-type, flavodoxin. The affinities of all of the mutant apoproteins for FMN and, riboflavin were less than that of the wild-type apoprotein, and the redox, potentials of the two 1-electron steps in the reduction of the complex, with FMN were also affected by the mutations. Values for the dissociation, constants of the complexes of the apoprotein with the semiquinone and, hydroquinone forms of FMN were calculated from the redox potentials and, the dissociation constant of the oxidized complex and used to derive the, free energies of binding of the FMN in its three oxidation states. These, showed that the semiquinone is destabilized in all of the mutants, and, that the extent of destabilization tends to increase with increasing, bulkiness of the side chain at residue 61. It is concluded that the, hydrogen bond between the carbonyl of glycine-61 and N(5)H of FMN, semiquinone in wild-type flavodoxin is either absent or severely impaired, in the mutants. X-ray crystal structure analysis of the oxidized forms of, the four mutant proteins shows that the protein loop that contains residue, 61 is moved away from the flavin by 5-6 A. The hydrogen bond formed, between the backbone nitrogen of aspartate-62 and O(4) of the, dimethylisoalloxazine of the flavin in wild-type flavodoxin is absent in, the mutants. Reliable structural information was not obtained for the, reduced forms of the mutant proteins, but if the mutants change, conformation when the flavin is reduced to the semiquinone, to facilitate, hydrogen bonding between N(5)H and the carbonyl of residue 61, then the, change must be different from that known to occur in wild-type flavodoxin.
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<StructureSection load='1akw' size='340' side='right'caption='[[1akw]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1akw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AKW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AKW FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1akw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1akw OCA], [https://pdbe.org/1akw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1akw RCSB], [https://www.ebi.ac.uk/pdbsum/1akw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1akw ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/FLAV_DESVH FLAV_DESVH] Low-potential electron donor to a number of redox enzymes.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ak/1akw_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1akw ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1AKW is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris] with FMN as [http://en.wikipedia.org/wiki/ligand ligand]. Structure known Active Site: FMN. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1AKW OCA].
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*[[Flavodoxin 3D structures|Flavodoxin 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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Modulation of the redox potentials of FMN in Desulfovibrio vulgaris flavodoxin: thermodynamic properties and crystal structures of glycine-61 mutants., O'Farrell PA, Walsh MA, McCarthy AA, Higgins TM, Voordouw G, Mayhew SG, Biochemistry. 1998 Jun 9;37(23):8405-16. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9622492 9622492]
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[[Category: Desulfovibrio vulgaris str. Hildenborough]]
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[[Category: Desulfovibrio vulgaris]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Higgins T]]
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[[Category: Higgins, T.]]
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[[Category: Mccarthy A]]
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[[Category: Mccarthy, A.]]
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[[Category: Walsh M]]
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[[Category: Walsh, M.]]
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[[Category: FMN]]
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[[Category: electron transfer]]
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[[Category: electron transport]]
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[[Category: flavodoxin]]
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[[Category: flavoprotein]]
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[[Category: fmn]]
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[[Category: mutant]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Mon Nov 5 14:04:05 2007''
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Current revision

G61L OXIDIZED FLAVODOXIN MUTANT

PDB ID 1akw

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