This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ofy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:18, 28 December 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ofy.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.==
-
|PDB= 2ofy |SIZE=350|CAPTION= <scene name='initialview01'>2ofy</scene>, resolution 1.70&Aring;
+
<StructureSection load='2ofy' size='340' side='right'caption='[[2ofy]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2ofy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OFY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OFY FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
|GENE= RHA1_ro04071 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1831 Rhodococcus sp.])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ofy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ofy OCA], [https://pdbe.org/2ofy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ofy RCSB], [https://www.ebi.ac.uk/pdbsum/2ofy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ofy ProSAT], [https://www.topsan.org/Proteins/MCSG/2ofy TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q0S9B8_RHOJR Q0S9B8_RHOJR]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2OFY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_sp. Rhodococcus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OFY OCA].
+
Check<jmol>
-
[[Category: Rhodococcus sp.]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/of/2ofy_consurf.spt"</scriptWhenChecked>
-
[[Category: Chruszcz, M.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Cymborowski, M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Edwards, A.]]
+
</jmolCheckbox>
-
[[Category: Joachimiak, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ofy ConSurf].
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
<div style="clear:both"></div>
-
[[Category: Minor, W.]]
+
__TOC__
-
[[Category: Onopriyenko, O.]]
+
</StructureSection>
-
[[Category: Savchenko, A.]]
+
[[Category: Large Structures]]
-
[[Category: Shumilin, I A.]]
+
[[Category: Rhodococcus jostii RHA1]]
-
[[Category: Skarina, T.]]
+
[[Category: Chruszcz M]]
-
[[Category: Yim, V.]]
+
[[Category: Cymborowski M]]
-
[[Category: mcsg]]
+
[[Category: Edwards A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Joachimiak A]]
-
[[Category: protein structure initiative]]
+
[[Category: Minor W]]
-
[[Category: psi]]
+
[[Category: Onopriyenko O]]
-
[[Category: structural genomic]]
+
[[Category: Savchenko A]]
-
[[Category: transcription regulator]]
+
[[Category: Shumilin IA]]
-
[[Category: xre-family]]
+
[[Category: Skarina T]]
-
 
+
[[Category: Yim V]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 17:59:10 2008''
+

Current revision

Crystal structure of putative XRE-family transcriptional regulator from Rhodococcus sp.

PDB ID 2ofy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools