4mu3

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==The form A structure of an E21Q catalytic mutant of A. thaliana IGPD2 in complex with Mn2+ and a mixture of its substrate, 2R3S-IGP, and an inhibitor, 2S3S-IGP, to 1.12 A resolution==
==The form A structure of an E21Q catalytic mutant of A. thaliana IGPD2 in complex with Mn2+ and a mixture of its substrate, 2R3S-IGP, and an inhibitor, 2S3S-IGP, to 1.12 A resolution==
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<StructureSection load='4mu3' size='340' side='right' caption='[[4mu3]], [[Resolution|resolution]] 1.12&Aring;' scene=''>
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<StructureSection load='4mu3' size='340' side='right'caption='[[4mu3]], [[Resolution|resolution]] 1.12&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4mu3]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MU3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MU3 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4mu3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MU3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MU3 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IG2:(2S,3S)-2,3-DIHYDROXY-3-(1H-IMIDAZOL-5-YL)PROPYL+DIHYDROGEN+PHOSPHATE'>IG2</scene>, <scene name='pdbligand=IYP:(2R,3S)-2,3-DIHYDROXY-3-(1H-IMIDAZOL-5-YL)PROPYL+DIHYDROGEN+PHOSPHATE'>IYP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.12&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4mu0|4mu0]], [[4mu1|4mu1]], [[4mu2|4mu2]], [[4mu4|4mu4]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=IG2:(2S,3S)-2,3-DIHYDROXY-3-(1H-IMIDAZOL-5-YL)PROPYL+DIHYDROGEN+PHOSPHATE'>IG2</scene>, <scene name='pdbligand=IYP:(2R,3S)-2,3-DIHYDROXY-3-(1H-IMIDAZOL-5-YL)PROPYL+DIHYDROGEN+PHOSPHATE'>IYP</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Imidazoleglycerol-phosphate_dehydratase Imidazoleglycerol-phosphate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.19 4.2.1.19] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mu3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mu3 OCA], [https://pdbe.org/4mu3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mu3 RCSB], [https://www.ebi.ac.uk/pdbsum/4mu3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mu3 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mu3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mu3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4mu3 RCSB], [http://www.ebi.ac.uk/pdbsum/4mu3 PDBsum]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/HIS5B_ARATH HIS5B_ARATH]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Imidazoleglycerol-phosphate dehydratase (IGPD) catalyzes the Mn(II)-dependent dehydration of imidazoleglycerol phosphate (IGP) to 3-(1H-imidazol-4-yl)-2-oxopropyl dihydrogen phosphate during biosynthesis of histidine. As part of a program of herbicide design, we have determined a series of high-resolution crystal structures of an inactive mutant of IGPD2 from Arabidopsis thaliana in complex with IGP. The structures represent snapshots of the enzyme trapped at different stages of the catalytic cycle and show how substrate binding triggers a switch in the coordination state of an active site Mn(II) between six- and five-coordinate species. This switch is critical to prime the active site for catalysis, by facilitating the formation of a high-energy imidazolate intermediate. This work not only provides evidence for the molecular processes that dominate catalysis in IGPD, but also describes how the manipulation of metal coordination can be linked to discrete steps in catalysis, demonstrating one way that metalloenzymes exploit the unique properties of metal ions to diversify their chemistry.
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Crystal Structures Reveal that the Reaction Mechanism of Imidazoleglycerol-Phosphate Dehydratase Is Controlled by Switching Mn(II) Coordination.,Bisson C, Britton KL, Sedelnikova SE, Rodgers HF, Eadsforth TC, Viner RC, Hawkes TR, Baker PJ, Rice DW Structure. 2015 Jul 7;23(7):1236-45. doi: 10.1016/j.str.2015.05.012. Epub 2015, Jun 18. PMID:26095028<ref>PMID:26095028</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4mu3" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Imidazoleglycerol-phosphate dehydratase]]
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[[Category: Arabidopsis thaliana]]
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[[Category: Baker, P J]]
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[[Category: Large Structures]]
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[[Category: Bisson, C]]
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[[Category: Baker PJ]]
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[[Category: Britton, K L]]
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[[Category: Bisson C]]
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[[Category: Rice, D W]]
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[[Category: Britton KL]]
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[[Category: Sedelnikova, S E]]
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[[Category: Rice DW]]
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[[Category: Chloroplastic]]
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[[Category: Sedelnikova SE]]
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[[Category: Histidine biosynthesis]]
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[[Category: Hydro-lyase]]
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[[Category: Lyase-lyase inhibitor complex]]
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[[Category: Manganese binding]]
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Current revision

The form A structure of an E21Q catalytic mutant of A. thaliana IGPD2 in complex with Mn2+ and a mixture of its substrate, 2R3S-IGP, and an inhibitor, 2S3S-IGP, to 1.12 A resolution

PDB ID 4mu3

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