This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3qdf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:41, 14 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from Mycobacterium marinum==
==Crystal structure of 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from Mycobacterium marinum==
-
<StructureSection load='3qdf' size='340' side='right' caption='[[3qdf]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+
<StructureSection load='3qdf' size='340' side='right'caption='[[3qdf]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3qdf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_marinum Mycobacterium marinum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QDF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3qdf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_marinum_M Mycobacterium marinum M]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QDF FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MMAR_1718 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1781 Mycobacterium marinum])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-carboxymethyl-2-hydroxymuconate_Delta-isomerase 5-carboxymethyl-2-hydroxymuconate Delta-isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.3.10 5.3.3.10] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qdf OCA], [https://pdbe.org/3qdf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qdf RCSB], [https://www.ebi.ac.uk/pdbsum/3qdf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qdf ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qdf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qdf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3qdf RCSB], [http://www.ebi.ac.uk/pdbsum/3qdf PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/B2HIH3_MYCMM B2HIH3_MYCMM]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 5-carboxymethyl-2-hydroxymuconate Delta-isomerase]]
+
[[Category: Large Structures]]
-
[[Category: Mycobacterium marinum]]
+
[[Category: Mycobacterium marinum M]]
-
[[Category: Structural genomic]]
+
-
[[Category: 2-hydroxyhepta-2]]
+
-
[[Category: 2-oxohept-3-enedioate]]
+
-
[[Category: 4-diene-1]]
+
-
[[Category: 4-dienedioate]]
+
-
[[Category: 7-dioate isomerase]]
+
-
[[Category: Homoprotocatechuate degradative pathway]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Mycobacterium]]
+
-
[[Category: Non-pathogenic species]]
+
-
[[Category: Rv2993c ortholog]]
+
-
[[Category: Ssgcid]]
+
-
[[Category: Tuberculosis]]
+

Current revision

Crystal structure of 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from Mycobacterium marinum

PDB ID 3qdf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools