This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4whx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:53, 28 December 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==X-ray Crystal Structure of an Amino Acid Aminotransferase from Burkholderia pseudomallei Bound to the Co-factor Pyridoxal Phosphate==
==X-ray Crystal Structure of an Amino Acid Aminotransferase from Burkholderia pseudomallei Bound to the Co-factor Pyridoxal Phosphate==
-
<StructureSection load='4whx' size='340' side='right' caption='[[4whx]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+
<StructureSection load='4whx' size='340' side='right'caption='[[4whx]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4whx]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WHX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4WHX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4whx]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_pseudomallei_576 Burkholderia pseudomallei 576]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WHX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WHX FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ALA:ALANINE'>ALA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.05&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LLP:2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)'>LLP</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ALA:ALANINE'>ALA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3u0g|3u0g]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4whx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4whx OCA], [https://pdbe.org/4whx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4whx RCSB], [https://www.ebi.ac.uk/pdbsum/4whx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4whx ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Branched-chain-amino-acid_transaminase Branched-chain-amino-acid transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.42 2.6.1.42] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4whx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4whx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4whx RCSB], [http://www.ebi.ac.uk/pdbsum/4whx PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A0E1U3Z8_BURPE A0A0E1U3Z8_BURPE] Acts on leucine, isoleucine and valine.[ARBA:ARBA00003109][RuleBase:RU364094]
 +
 +
==See Also==
 +
*[[Aminotransferase 3D structures|Aminotransferase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Branched-chain-amino-acid transaminase]]
+
[[Category: Burkholderia pseudomallei 576]]
-
[[Category: Dranow, D M]]
+
[[Category: Large Structures]]
-
[[Category: Edwards, T E]]
+
[[Category: Dranow DM]]
-
[[Category: Fairman, J W]]
+
[[Category: Edwards TE]]
-
[[Category: Lorimer, D]]
+
[[Category: Fairman JW]]
-
[[Category: Structural genomic]]
+
[[Category: Lorimer D]]
-
[[Category: Taylor, B M]]
+
[[Category: Taylor BM]]
-
[[Category: Aminotransferase]]
+
-
[[Category: Burkholderia pseudomallei]]
+
-
[[Category: Pyridoxal phosphate]]
+
-
[[Category: Ssgcid]]
+

Current revision

X-ray Crystal Structure of an Amino Acid Aminotransferase from Burkholderia pseudomallei Bound to the Co-factor Pyridoxal Phosphate

PDB ID 4whx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools