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| ==The structure of a glycoside hydrolase family 81 endo-[beta]-1,3-glucanase== | | ==The structure of a glycoside hydrolase family 81 endo-[beta]-1,3-glucanase== |
- | <StructureSection load='4k35' size='340' side='right' caption='[[4k35]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='4k35' size='340' side='right'caption='[[4k35]], [[Resolution|resolution]] 2.00Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4k35]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhizomucor_miehei Rhizomucor miehei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K35 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4K35 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4k35]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhizomucor_miehei Rhizomucor miehei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4K35 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4K35 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.003Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4k3a|4k3a]]</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4k35 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k35 OCA], [https://pdbe.org/4k35 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4k35 RCSB], [https://www.ebi.ac.uk/pdbsum/4k35 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4k35 ProSAT]</span></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Rhizomucor miehei ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4839 Rhizomucor miehei])</td></tr>
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- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] </span></td></tr> | + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4k35 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4k35 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4k35 RCSB], [http://www.ebi.ac.uk/pdbsum/4k35 PDBsum]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/ENG1_RHIMI ENG1_RHIMI] Cleaves internal linkages in 1,3-beta-glucan.<ref>PMID:34801773</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
| </div> | | </div> |
| + | <div class="pdbe-citations 4k35" style="background-color:#fffaf0;"></div> |
| | | |
| ==See Also== | | ==See Also== |
- | *[[Glucanase|Glucanase]] | + | *[[Glucanase 3D structures|Glucanase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Glucan endo-1,3-beta-D-glucosidase]] | + | [[Category: Large Structures]] |
| [[Category: Rhizomucor miehei]] | | [[Category: Rhizomucor miehei]] |
- | [[Category: Chen, Z Z]] | + | [[Category: Chen ZZ]] |
- | [[Category: Hilgenfeld, R]] | + | [[Category: Hilgenfeld R]] |
- | [[Category: Jiang, Z Q]] | + | [[Category: Jiang ZQ]] |
- | [[Category: Yan, Q J]] | + | [[Category: Yan QJ]] |
- | [[Category: Yang, S Q]] | + | [[Category: Yang SQ]] |
- | [[Category: Zhou, P]] | + | [[Category: Zhou P]] |
- | [[Category: 3-glucanase]]
| + | |
- | [[Category: Beta-1]]
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- | [[Category: Endo-beta-1]]
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- | [[Category: Extracellular]]
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- | [[Category: Glucoside hydrolases family 81]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Rhzmucor miehei]]
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- | [[Category: Supersandwich]]
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| Structural highlights
Function
ENG1_RHIMI Cleaves internal linkages in 1,3-beta-glucan.[1]
Publication Abstract from PubMed
A beta-1,3-glucanase gene, encoding a protein of 1,793 amino acids, was cloned from a strain of Paenibacillus sp. in this study. This large protein, designated as LamA, consists of many putative functional units, which include, from N to C terminus, a leader peptide, three repeats of the S-layer homologous module, a catalytic module of glycoside hydrolase family 16, four repeats of the carbohydrate-binding module of family CBM_4_9, and an analogue of coagulation factor Fa5/8C. Several truncated proteins, composed of the catalytic module with various organizations of the appended modules, were successfully expressed and characterized in this study. Data indicated that the catalytic module specifically hydrolyze beta-1,3- and beta-1,3-1,4-glucans. Also, laminaritriose was the major product upon endolytic hydrolysis of laminarin. The CBM repeats and Fa5/8C analogue substantially enhanced the hydrolyzing activity of the catalytic module, particularly toward insoluble complex substrates, suggesting their modulating functions in the enzymatic activity of LamA. Carbohydrate-binding assay confirmed the binding capabilities of the CBM repeats and Fa5/8C analogue to beta-1,3-, beta-1,3-1,4-, and even beta-1,4-glucans. These appended modules also enhanced the inhibition effect of the catalytic module on the growth of Candida albicans and Rhizoctonia solani.
Cloning and functional characterization of a complex endo-beta-1,3-glucanase from Paenibacillus sp.,Cheng YM, Hong TY, Liu CC, Meng M Appl Microbiol Biotechnol. 2009 Jan;81(6):1051-61. doi:, 10.1007/s00253-008-1617-9. Epub 2008 Sep 19. PMID:18802694[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Ma J, Qin Z, Zhou P, Wang R, Yan Q, Jiang Z, Yang S. Structural insights into the substrate recognition and catalytic mechanism of a fungal glycoside hydrolase family 81 β-1,3-glucanase. Enzyme Microb Technol. 2022 Jan;153:109948. PMID:34801773 doi:10.1016/j.enzmictec.2021.109948
- ↑ Cheng YM, Hong TY, Liu CC, Meng M. Cloning and functional characterization of a complex endo-beta-1,3-glucanase from Paenibacillus sp. Appl Microbiol Biotechnol. 2009 Jan;81(6):1051-61. doi:, 10.1007/s00253-008-1617-9. Epub 2008 Sep 19. PMID:18802694 doi:10.1007/s00253-008-1617-9
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