2p79

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:59, 25 October 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2p79.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of TTHB049 from Thermus thermophilus HB8==
-
|PDB= 2p79 |SIZE=350|CAPTION= <scene name='initialview01'>2p79</scene>, resolution 1.75&Aring;
+
<StructureSection load='2p79' size='340' side='right'caption='[[2p79]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<table><tr><td colspan='2'>[[2p79]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P79 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P79 FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Alpha-ribazole_phosphatase Alpha-ribazole phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.73 3.1.3.73]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p79 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p79 OCA], [https://pdbe.org/2p79 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p79 RCSB], [https://www.ebi.ac.uk/pdbsum/2p79 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p79 ProSAT], [https://www.topsan.org/Proteins/RSGI/2p79 TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of TTHB049 from Thermus thermophilus HB8'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q53WB3_THET8 Q53WB3_THET8]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2P79 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P79 OCA].
+
Check<jmol>
-
[[Category: Alpha-ribazole phosphatase]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p7/2p79_consurf.spt"</scriptWhenChecked>
-
[[Category: Thermus thermophilus]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Kageyama, Y.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Kunishima, N.]]
+
</jmolCheckbox>
-
[[Category: Matsuura, Y.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p79 ConSurf].
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
<div style="clear:both"></div>
-
[[Category: Sugahara, M.]]
+
__TOC__
-
[[Category: Taketa, M.]]
+
</StructureSection>
-
[[Category: GOL]]
+
[[Category: Large Structures]]
-
[[Category: NA]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: hydrolase]]
+
[[Category: Kageyama Y]]
-
[[Category: national project on protein structural and functional analyse]]
+
[[Category: Kunishima N]]
-
[[Category: nppsfa]]
+
[[Category: Matsuura Y]]
-
[[Category: riken structural genomics/proteomics initiative]]
+
[[Category: Sugahara M]]
-
[[Category: rsgi]]
+
[[Category: Taketa M]]
-
[[Category: structural genomic]]
+
-
[[Category: thermus thermophilus hb8]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:09:39 2008''
+

Current revision

Crystal structure of TTHB049 from Thermus thermophilus HB8

PDB ID 2p79

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools