This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4de4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:14, 21 September 2022) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
 +
==Crystal structure of aminoglycoside phosphotransferase APH(2")-Id/APH(2")-IVa in complex with HEPES==
==Crystal structure of aminoglycoside phosphotransferase APH(2")-Id/APH(2")-IVa in complex with HEPES==
-
<StructureSection load='4de4' size='340' side='right' caption='[[4de4]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='4de4' size='340' side='right'caption='[[4de4]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4de4]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterococcus_casseliflavus Enterococcus casseliflavus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r80 3r80]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DE4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DE4 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4de4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_casseliflavus Enterococcus casseliflavus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=3r80 3r80]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DE4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DE4 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4de4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4de4 OCA], [https://pdbe.org/4de4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4de4 RCSB], [https://www.ebi.ac.uk/pdbsum/4de4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4de4 ProSAT]</span></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3r7z|3r7z]], [[3r81|3r81]], [[3r82|3r82]]</td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">aph(2")-Id ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37734 Enterococcus casseliflavus])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4de4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4de4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4de4 RCSB], [http://www.ebi.ac.uk/pdbsum/4de4 PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/O68183_ENTCA O68183_ENTCA]]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 17:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4de4" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Phosphotransferase|Phosphotransferase]]
+
*[[Phosphotransferase 3D structures|Phosphotransferase 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 25: Line 26:
</StructureSection>
</StructureSection>
[[Category: Enterococcus casseliflavus]]
[[Category: Enterococcus casseliflavus]]
-
[[Category: Anderson, W F]]
+
[[Category: Large Structures]]
-
[[Category: Structural genomic]]
+
[[Category: Anderson WF]]
-
[[Category: Egorova, O]]
+
[[Category: Di Leo R]]
-
[[Category: Evdokimova, E]]
+
[[Category: Egorova O]]
-
[[Category: Leo, R Di]]
+
[[Category: Evdokimova E]]
-
[[Category: Li, H]]
+
[[Category: Li H]]
-
[[Category: Minasov, G]]
+
[[Category: Minasov G]]
-
[[Category: Nocek, B]]
+
[[Category: Nocek B]]
-
[[Category: Savchenko, A]]
+
[[Category: Savchenko A]]
-
[[Category: Stogios, P J]]
+
[[Category: Stogios PJ]]
-
[[Category: Tan, K]]
+
[[Category: Tan K]]
-
[[Category: Aminoglycoside phosphotransferase]]
+
-
[[Category: Aminoglycoside]]
+
-
[[Category: Csgid]]
+
-
[[Category: Eukaryotic protein kinase-like fold]]
+
-
[[Category: Intracellular]]
+
-
[[Category: Kinase]]
+
-
[[Category: National institute of allergy and infectious disease]]
+
-
[[Category: Niaid]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of aminoglycoside phosphotransferase APH(2")-Id/APH(2")-IVa in complex with HEPES

PDB ID 4de4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4de4"
Personal tools