This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4n2g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:46, 20 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of Protein Arginine Deiminase 2 (D169A, 10 mM Ca2+)==
==Crystal structure of Protein Arginine Deiminase 2 (D169A, 10 mM Ca2+)==
-
<StructureSection load='4n2g' size='340' side='right' caption='[[4n2g]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
+
<StructureSection load='4n2g' size='340' side='right'caption='[[4n2g]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4n2g]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N2G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N2G FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4n2g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N2G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4N2G FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4n20|4n20]], [[4n22|4n22]], [[4n24|4n24]], [[4n25|4n25]], [[4n26|4n26]], [[4n28|4n28]], [[4n2a|4n2a]], [[4n2b|4n2b]], [[4n2c|4n2c]], [[4n2d|4n2d]], [[4n2e|4n2e]], [[4n2f|4n2f]], [[4n2h|4n2h]], [[4n2i|4n2i]], [[4n2k|4n2k]], [[4n2l|4n2l]], [[4n2m|4n2m]], [[4n2n|4n2n]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-arginine_deiminase Protein-arginine deiminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.15 3.5.3.15] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4n2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n2g OCA], [https://pdbe.org/4n2g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4n2g RCSB], [https://www.ebi.ac.uk/pdbsum/4n2g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4n2g ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n2g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n2g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4n2g RCSB], [http://www.ebi.ac.uk/pdbsum/4n2g PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/PADI2_HUMAN PADI2_HUMAN]] Catalyzes the deimination of arginine residues of proteins.
+
[https://www.uniprot.org/uniprot/PADI2_HUMAN PADI2_HUMAN] Catalyzes the deimination of arginine residues of proteins.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4n2g" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Protein-arginine deiminase]]
+
[[Category: Homo sapiens]]
-
[[Category: Coonrod, S A]]
+
[[Category: Large Structures]]
-
[[Category: Dreyton, C J]]
+
[[Category: Coonrod SA]]
-
[[Category: Fang, P]]
+
[[Category: Dreyton CJ]]
-
[[Category: Gross, M L]]
+
[[Category: Fang P]]
-
[[Category: Guo, M]]
+
[[Category: Gross ML]]
-
[[Category: Slade, D J]]
+
[[Category: Guo M]]
-
[[Category: Thompson, P R]]
+
[[Category: Slade DJ]]
-
[[Category: Zhang, X]]
+
[[Category: Thompson PR]]
-
[[Category: Zhang, Y]]
+
[[Category: Zhang X]]
-
[[Category: Deiminase]]
+
[[Category: Zhang Y]]
-
[[Category: Hydrolase]]
+

Current revision

Crystal structure of Protein Arginine Deiminase 2 (D169A, 10 mM Ca2+)

PDB ID 4n2g

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools