This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pmb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:27, 17 June 2021) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pmb.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of predicted nucleotide-binding protein from Vibrio cholerae==
-
|PDB= 2pmb |SIZE=350|CAPTION= <scene name='initialview01'>2pmb</scene>, resolution 1.99&Aring;
+
<StructureSection load='2pmb' size='340' side='right'caption='[[2pmb]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PMB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PMB FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pmb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pmb OCA], [https://pdbe.org/2pmb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pmb RCSB], [https://www.ebi.ac.uk/pdbsum/2pmb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pmb ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2pmb TOPSAN]</span></td></tr>
-
|GENE= VC_0899 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 Vibrio cholerae])
+
</table>
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Crystal structure of predicted nucleotide-binding protein from Vibrio cholerae'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pm/2pmb_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2PMB is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PMB OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Vibrio cholerae]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pmb ConSurf].
-
[[Category: Almo, S C.]]
+
<div style="clear:both"></div>
-
[[Category: Burley, S K.]]
+
__TOC__
-
[[Category: Gheyi, T.]]
+
</StructureSection>
-
[[Category: Gilmore, J.]]
+
[[Category: Large Structures]]
-
[[Category: Iizuka, M.]]
+
[[Category: Almo SC]]
-
[[Category: Maletic, M.]]
+
[[Category: Burley SK]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Gheyi T]]
-
[[Category: Patskovsky, Y.]]
+
[[Category: Gilmore J]]
-
[[Category: Sauder, J M.]]
+
[[Category: Iizuka M]]
-
[[Category: Shi, W.]]
+
[[Category: Maletic M]]
-
[[Category: Smith, D.]]
+
[[Category: Patskovsky Y]]
-
[[Category: Toro, R.]]
+
[[Category: Sauder JM]]
-
[[Category: Wasserman, S R.]]
+
[[Category: Shi W]]
-
[[Category: Zhan, C.]]
+
[[Category: Smith D]]
-
[[Category: GOL]]
+
[[Category: Toro R]]
-
[[Category: PO4]]
+
[[Category: Wasserman SR]]
-
[[Category: new york structural genomics research consortium]]
+
[[Category: Zhan C]]
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgrc]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:14:47 2008''
+

Current revision

Crystal structure of predicted nucleotide-binding protein from Vibrio cholerae

PDB ID 2pmb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pmb"
Personal tools