This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.




2ppw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:25, 6 November 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ppw.jpg|left|200px]]
 
-
{{Structure
+
==The crystal structure of uncharacterized Ribose 5-phosphate isomerase RpiB from Streptococcus pneumoniae==
-
|PDB= 2ppw |SIZE=350|CAPTION= <scene name='initialview01'>2ppw</scene>, resolution 2.01&Aring;
+
<StructureSection load='2ppw' size='340' side='right'caption='[[2ppw]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=SO4:SULFATE ION'>SO4</scene>
+
<table><tr><td colspan='2'>[[2ppw]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PPW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PPW FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01&#8491;</td></tr>
-
|GENE= SP_0319 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 Streptococcus pneumoniae TIGR4])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ppw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ppw OCA], [https://pdbe.org/2ppw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ppw RCSB], [https://www.ebi.ac.uk/pdbsum/2ppw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ppw ProSAT], [https://www.topsan.org/Proteins/MCSG/2ppw TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''The crystal structure of uncharacterized Ribose 5-phosphate isomerase RpiB from Streptococcus pneumoniae'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/A0A0H2UNJ8_STRPN A0A0H2UNJ8_STRPN]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2PPW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PPW OCA].
+
Check<jmol>
-
[[Category: Single protein]]
+
<jmolCheckbox>
-
[[Category: Streptococcus pneumoniae tigr4]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/2ppw_consurf.spt"</scriptWhenChecked>
-
[[Category: Abdullah, J.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Joachimiak, A.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmolCheckbox>
-
[[Category: Wu, R.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ppw ConSurf].
-
[[Category: Zhang, R.]]
+
<div style="clear:both"></div>
-
[[Category: SO4]]
+
__TOC__
-
[[Category: mcsg]]
+
</StructureSection>
-
[[Category: midwest center for structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: protein structure initiative]]
+
[[Category: Streptococcus pneumoniae TIGR4]]
-
[[Category: psi-2]]
+
[[Category: Abdullah J]]
-
[[Category: streptococcus pneumoniae]]
+
[[Category: Joachimiak A]]
-
[[Category: structural genomic]]
+
[[Category: Wu R]]
-
[[Category: the putative rpib]]
+
[[Category: Zhang R]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:16:02 2008''
+

Current revision

The crystal structure of uncharacterized Ribose 5-phosphate isomerase RpiB from Streptococcus pneumoniae

PDB ID 2ppw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools