This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pv4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:48, 25 January 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pv4.jpg|left|200px]]
 
-
{{Structure
+
==CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM DUF3069 FAMILY (SAMA_2622) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.95 A RESOLUTION==
-
|PDB= 2pv4 |SIZE=350|CAPTION= <scene name='initialview01'>2pv4</scene>, resolution 1.950&Aring;
+
<StructureSection load='2pv4' size='340' side='right'caption='[[2pv4]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
+
<table><tr><td colspan='2'>[[2pv4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_amazonensis_SB2B Shewanella amazonensis SB2B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PV4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PV4 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE= YP_928494.1, Sama_2622 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=326297 Shewanella amazonensis SB2B])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pv4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pv4 OCA], [https://pdbe.org/2pv4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pv4 RCSB], [https://www.ebi.ac.uk/pdbsum/2pv4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pv4 ProSAT], [https://www.topsan.org/Proteins/JCSG/2pv4 TOPSAN]</span></td></tr>
-
}}
+
</table>
-
 
+
== Function ==
-
'''Crystal structure of uncharacterized protein (YP_928494.1) from Shewanella amazonensis SB2B at 1.95 A resolution'''
+
[https://www.uniprot.org/uniprot/A1S8W8_SHEAM A1S8W8_SHEAM]
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2PV4 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Shewanella_amazonensis_sb2b Shewanella amazonensis sb2b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PV4 OCA].
+
<jmolCheckbox>
-
[[Category: Shewanella amazonensis sb2b]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pv/2pv4_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: GOL]]
+
</jmolCheckbox>
-
[[Category: jcsg]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pv4 ConSurf].
-
[[Category: joint center for structural genomic]]
+
<div style="clear:both"></div>
-
[[Category: protein structure initiative]]
+
__TOC__
-
[[Category: psi-2]]
+
</StructureSection>
-
[[Category: structural genomic]]
+
[[Category: Large Structures]]
-
[[Category: uncharacterized protein]]
+
[[Category: Shewanella amazonensis SB2B]]
-
[[Category: yp_928494 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:17:48 2008''
+

Current revision

CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM DUF3069 FAMILY (SAMA_2622) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.95 A RESOLUTION

PDB ID 2pv4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pv4"
Personal tools