4y9m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "4y9m" [edit=sysop:move=sysop])
Current revision (10:54, 10 January 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 4y9m is ON HOLD
+
==PA3825-EAL Metal-Free-Apo Structure==
 +
<StructureSection load='4y9m' size='340' side='right'caption='[[4y9m]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4y9m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4Y9M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4Y9M FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4y9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4y9m OCA], [https://pdbe.org/4y9m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4y9m RCSB], [https://www.ebi.ac.uk/pdbsum/4y9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4y9m ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9HXH7_PSEAE Q9HXH7_PSEAE]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The bacterial second messenger cyclic di-3',5'-guanosine monophosphate (c-di-GMP) is a key regulator of bacterial motility and virulence. As high levels of c-di-GMP are associated with the biofilm lifestyle, c-di-GMP hydrolysing phosphodiesterases (PDEs) have been identified as key targets to aid development of novel strategies to treat chronic infection by exploiting biofilm dispersal. We have studied the EAL signature motif-containing phosphodiesterase domains from the Pseudomonas aeruginosa proteins PA3825 (PA3825EAL) and PA1727 (MucREAL). Different dimerisation interfaces allow us to identify interface independent principles of enzyme regulation. Unlike previously characterised two-metal binding EAL-phosphodiesterases, PA3825EAL in complex with pGpG provides a model for a third metal site. The third metal is positioned to stabilise the negative charge of the 5'-phosphate, and thus three metals could be required for catalysis in analogy to other nucleases. This newly uncovered variation in metal coordination may provide a further level of bacterial PDE regulation.
-
Authors: Bellini, D., Horrell, S., Wagner, A., Strange, R., Walsh, M.A.
+
Dimerisation induced formation of the active site and the identification of three metal sites in EAL-phosphodiesterases.,Bellini D, Horrell S, Hutchin A, Phippen CW, Strange RW, Cai Y, Wagner A, Webb JS, Tews I, Walsh MA Sci Rep. 2017 Feb 10;7:42166. doi: 10.1038/srep42166. PMID:28186120<ref>PMID:28186120</ref>
-
Description: PA3825-EAL Metal-Free-Apo Structure
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Wagner, A]]
+
<div class="pdbe-citations 4y9m" style="background-color:#fffaf0;"></div>
-
[[Category: Walsh, M.A]]
+
== References ==
-
[[Category: Bellini, D]]
+
<references/>
-
[[Category: Strange, R]]
+
__TOC__
-
[[Category: Horrell, S]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pseudomonas aeruginosa PAO1]]
 +
[[Category: Bellini D]]
 +
[[Category: Horrell S]]
 +
[[Category: Strange R]]
 +
[[Category: Wagner A]]
 +
[[Category: Walsh MA]]

Current revision

PA3825-EAL Metal-Free-Apo Structure

PDB ID 4y9m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools