4yfm

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(New page: '''Unreleased structure''' The entry 4yfm is ON HOLD until Paper Publication Authors: Soroka, D., Li de la Sierra-Gallay, I., Dubee, V., van Tilbeurgh, H., Arthur, M. Description: Clas...)
Current revision (10:55, 10 January 2024) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 4yfm is ON HOLD until Paper Publication
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==Class A beta-lactamase from Mycobacterium abscessus==
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<StructureSection load='4yfm' size='340' side='right'caption='[[4yfm]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4yfm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacteroides_abscessus Mycobacteroides abscessus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YFM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YFM FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yfm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yfm OCA], [https://pdbe.org/4yfm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yfm RCSB], [https://www.ebi.ac.uk/pdbsum/4yfm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yfm ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/B1MCI3_MYCA9 B1MCI3_MYCA9]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Combinations of beta-lactams with clavulanate are currently investigated for tuberculosis treatment. Since Mycobacterium tuberculosis produces a broad spectrum beta-lactamase, BlaC, the success of this approach could be compromised by the emergence of clavulanate-resistant variants, as observed for inhibitor resistant TEM variants in enterobacteria. Previous analyses based on site-directed mutagenesis of BlaC have led to the conclusion that this risk was limited. Here, we used a different approach based on determination of the crystal structure of beta-lactamase BlaMab of Mycobacterium abscessus, which efficiently hydrolyses clavulanate. Comparison of BlaMab and BlaC allowed for structure-assisted site-directed mutagenesis of BlaC and identification of the G132N substitution that was sufficient to switch interaction of BlaC with clavulanate from irreversible inactivation to efficient hydrolysis. The substitution, which restored the canonical SDN motif (SDG--&gt;SDN), allowed for efficient hydrolysis of clavulanate, with a more than 104 increase in kcat (0.41 s-1), without affecting hydrolysis of other beta-lactams. Mass spectrometry revealed that acylation of BlaC and of its G132N variant by clavulanate follows similar paths involving sequential formation of two acylenzymes. Decarboxylation of the first acylenzyme results in a stable secondary acylenzyme in BlaC, whereas hydrolysis occurs in the G132N variant. The SDN/SDG polymorphism defines two mycobacterial lineages comprising rapidly and slowly growing species, respectively. Together, these results suggest that the efficacy of beta-lactam-clavulanate combinations may be limited by emergence of resistance. beta-lactams active without clavulanate, such as faropenem, should be prioritized for development of new therapies.
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Authors: Soroka, D., Li de la Sierra-Gallay, I., Dubee, V., van Tilbeurgh, H., Arthur, M.
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Hydrolysis of clavulanate by Mycobacterium tuberculosis beta-lactamase BlaC harboring a canonic SDN motif.,Soroka D, Li de la Sierra-Gallay I, Dubee V, Triboulet S, van Tilbeurgh H, Compain F, Ballell L, Barros D, Mainardi JL, Hugonnet JE, Arthur M Antimicrob Agents Chemother. 2015 Jul 6. pii: AAC.00598-15. PMID:26149997<ref>PMID:26149997</ref>
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Description: Class A beta-lactamase from Mycobacterium abscessus
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Dubee, V]]
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<div class="pdbe-citations 4yfm" style="background-color:#fffaf0;"></div>
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[[Category: Soroka, D]]
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[[Category: Van Tilbeurgh, H]]
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==See Also==
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[[Category: Arthur, M]]
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*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
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[[Category: Li De La Sierra-Gallay, I]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mycobacteroides abscessus]]
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[[Category: Arthur M]]
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[[Category: Dubee V]]
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[[Category: Li de la Sierra-Gallay I]]
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[[Category: Soroka D]]
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[[Category: Van Tilbeurgh H]]

Current revision

Class A beta-lactamase from Mycobacterium abscessus

PDB ID 4yfm

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