4d5a

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==Clostridial Cysteine protease Cwp84 C116A after propeptide cleavage==
==Clostridial Cysteine protease Cwp84 C116A after propeptide cleavage==
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<StructureSection load='4d5a' size='340' side='right' caption='[[4d5a]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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<StructureSection load='4d5a' size='340' side='right'caption='[[4d5a]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4d5a]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D5A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4D5A FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4d5a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_QCD-32g58 Clostridioides difficile QCD-32g58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D5A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D5A FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4d59|4d59]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cathepsin_L Cathepsin L], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.22.15 3.4.22.15] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d5a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d5a OCA], [https://pdbe.org/4d5a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d5a RCSB], [https://www.ebi.ac.uk/pdbsum/4d5a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d5a ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4d5a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d5a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4d5a RCSB], [http://www.ebi.ac.uk/pdbsum/4d5a PDBsum]</span></td></tr>
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</table>
</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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In recent decades, the global healthcare problems caused by Clostridium difficile have increased at an alarming rate. A greater understanding of this antibiotic-resistant bacterium, particularly with respect to how it interacts with the host, is required for the development of novel strategies for fighting C. difficile infections. The surface layer (S-layer) of C. difficile is likely to be of significant importance to host-pathogen interactions. The mature S-layer is formed by a proteinaceous array consisting of multiple copies of a high-molecular-weight and a low-molecular-weight S-layer protein. These components result from the cleavage of SlpA by Cwp84, a cysteine protease. The structure of a truncated Cwp84 active-site mutant has recently been reported and the key features have been identified, providing the first structural insights into the role of Cwp84 in the formation of the S-layer. Here, two structures of Cwp84 after propeptide cleavage are presented and the three conformational changes that are observed are discussed. These changes result in a reconfiguration of the active site and exposure of the hydrophobic pocket.
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Cwp84, a Clostridium difficile cysteine protease, exhibits conformational flexibility in the absence of its propeptide.,Bradshaw WJ, Roberts AK, Shone CC, Acharya KR Acta Crystallogr F Struct Biol Commun. 2015 Mar 1;71(Pt 3):295-303. doi:, 10.1107/S2053230X15001065. Epub 2015 Feb 19. PMID:25760704<ref>PMID:25760704</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4d5a" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Cathepsin L]]
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[[Category: Clostridioides difficile QCD-32g58]]
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[[Category: Acharya, K R]]
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[[Category: Large Structures]]
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[[Category: Bradshaw, W J]]
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[[Category: Acharya KR]]
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[[Category: Roberts, A K]]
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[[Category: Bradshaw WJ]]
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[[Category: Shone, C C]]
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[[Category: Roberts AK]]
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[[Category: Hydrolase]]
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[[Category: Shone CC]]
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[[Category: S-layer]]
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[[Category: Surface layer]]
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Clostridial Cysteine protease Cwp84 C116A after propeptide cleavage

PDB ID 4d5a

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