|
|
| (14 intermediate revisions not shown.) |
| Line 1: |
Line 1: |
| - | [[Image:2qm7.jpg|left|200px]] | |
| | | | |
| - | {{Structure
| + | ==MeaB, A Bacterial Homolog of MMAA, Bound to GDP== |
| - | |PDB= 2qm7 |SIZE=350|CAPTION= <scene name='initialview01'>2qm7</scene>, resolution 1.85Å
| + | <StructureSection load='2qm7' size='340' side='right'caption='[[2qm7]], [[Resolution|resolution]] 1.85Å' scene=''> |
| - | |SITE= <scene name='pdbsite=AC1:Po4+Binding+Site+For+Residue+A+500'>AC1</scene>, <scene name='pdbsite=AC2:Po4+Binding+Site+For+Residue+A+501'>AC2</scene>, <scene name='pdbsite=AC3:Gdp+Binding+Site+For+Residue+A+601'>AC3</scene> and <scene name='pdbsite=AC4:Gdp+Binding+Site+For+Residue+B+602'>AC4</scene>
| + | == Structural highlights == |
| - | |LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene> and <scene name='pdbligand=GDP:GUANOSINE-5'-DIPHOSPHATE'>GDP</scene>
| + | <table><tr><td colspan='2'>[[2qm7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylorubrum_extorquens_AM1 Methylorubrum extorquens AM1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QM7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QM7 FirstGlance]. <br> |
| - | |ACTIVITY=
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85Å</td></tr> |
| - | |GENE= meaB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=408 Methylobacterium extorquens])
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| - | }}
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qm7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qm7 OCA], [https://pdbe.org/2qm7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qm7 RCSB], [https://www.ebi.ac.uk/pdbsum/2qm7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qm7 ProSAT]</span></td></tr> |
| - | | + | </table> |
| - | '''MeaB, A Bacterial Homolog of MMAA, Bound to GDP'''
| + | == Function == |
| - | | + | [https://www.uniprot.org/uniprot/Q8RPA0_METEX Q8RPA0_METEX] |
| - | | + | == Evolutionary Conservation == |
| - | ==Overview==
| + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | MeaB is an auxiliary protein that plays a crucial role in the protection and assembly of the B(12)-dependent enzyme methylmalonyl-CoA mutase. Impairments in the human homologue of MeaB, MMAA, lead to methylmalonic aciduria, an inborn error of metabolism. To explore the role of this metallochaperone, its structure was solved in the nucleotide-free form, as well as in the presence of product, GDP. MeaB is a homodimer, with each subunit containing a central alpha/beta-core G domain that is typical of the GTPase family, as well as alpha-helical extensions at the N and C termini that are not found in other metalloenzyme chaperone GTPases. The C-terminal extension appears to be essential for nucleotide-independent dimerization, and the N-terminal region is implicated in protein-protein interaction with its partner protein, methylmalonyl-CoA mutase. The structure of MeaB confirms that it is a member of the G3E family of P-loop GTPases, which contains other putative metallochaperones HypB, CooC, and UreG. Interestingly, the so-called switch regions, responsible for signal transduction following GTP hydrolysis, are found at the dimer interface of MeaB instead of being positioned at the surface of the protein where its partner protein methylmalonyl-CoA mutase should bind. This observation suggests a large conformation change of MeaB must occur between the GDP- and GTP-bound forms of this protein. Because of their high sequence homology, the missense mutations in MMAA that result in methylmalonic aciduria have been mapped onto MeaB and, in conjunction with mutagenesis data, provide possible explanations for the pathology of this disease.
| + | Check<jmol> |
| - | | + | <jmolCheckbox> |
| - | ==About this Structure== | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/2qm7_consurf.spt"</scriptWhenChecked> |
| - | 2QM7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Methylobacterium_extorquens Methylobacterium extorquens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QM7 OCA].
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | ==Reference== | + | </jmolCheckbox> |
| - | Crystal structure and mutagenesis of the metallochaperone MeaB: insight into the causes of methylmalonic aciduria., Hubbard PA, Padovani D, Labunska T, Mahlstedt SA, Banerjee R, Drennan CL, J Biol Chem. 2007 Oct 26;282(43):31308-16. Epub 2007 Aug 28. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17728257 17728257]
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qm7 ConSurf]. |
| - | [[Category: Methylobacterium extorquens]] | + | <div style="clear:both"></div> |
| - | [[Category: Single protein]]
| + | __TOC__ |
| - | [[Category: Banerjee, R.]]
| + | </StructureSection> |
| - | [[Category: Drennan, C L.]] | + | [[Category: Large Structures]] |
| - | [[Category: Hubbard, P A.]] | + | [[Category: Methylorubrum extorquens AM1]] |
| - | [[Category: Labunska, T.]]
| + | [[Category: Banerjee R]] |
| - | [[Category: Mahlstedt, S A.]] | + | [[Category: Drennan CL]] |
| - | [[Category: Padovani, D.]] | + | [[Category: Hubbard PA]] |
| - | [[Category: GDP]] | + | [[Category: Labunska T]] |
| - | [[Category: PO4]] | + | [[Category: Mahlstedt SA]] |
| - | [[Category: g protein]] | + | [[Category: Padovani D]] |
| - | [[Category: g3e]] | + | |
| - | [[Category: gtpase]] | + | |
| - | [[Category: metallochaperone]] | + | |
| - | | + | |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:27:14 2008''
| + | |
