This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qma

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:25, 25 June 2021) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qma.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticus==
-
|PDB= 2qma |SIZE=350|CAPTION= <scene name='initialview01'>2qma</scene>, resolution 1.81&Aring;
+
<StructureSection load='2qma' size='340' side='right'caption='[[2qma]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>
+
<table><tr><td colspan='2'>[[2qma]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QMA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QMA FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
|GENE= VP1942 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 Vibrio parahaemolyticus RIMD 2210633])
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP1942 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qma OCA], [https://pdbe.org/2qma PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qma RCSB], [https://www.ebi.ac.uk/pdbsum/2qma PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qma ProSAT], [https://www.topsan.org/Proteins/MCSG/2qma TOPSAN]</span></td></tr>
-
'''Crystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticus'''
+
</table>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2QMA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QMA OCA].
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/2qma_consurf.spt"</scriptWhenChecked>
-
[[Category: Vibrio parahaemolyticus rimd 2210633]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Gu, M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joachimiak, A.]]
+
</jmolCheckbox>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qma ConSurf].
-
[[Category: Osipiuk, J.]]
+
<div style="clear:both"></div>
-
[[Category: Sather, A.]]
+
__TOC__
-
[[Category: EDO]]
+
</StructureSection>
-
[[Category: aminotransferase]]
+
[[Category: Large Structures]]
-
[[Category: apc91511 1]]
+
[[Category: Vibpa]]
-
[[Category: glutamate decarboxylase]]
+
[[Category: Gu, M]]
-
[[Category: mcsg]]
+
[[Category: Joachimiak, A]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Structural genomic]]
-
[[Category: protein structure initiative]]
+
[[Category: Osipiuk, J]]
-
[[Category: psi-2]]
+
[[Category: Sather, A]]
-
[[Category: pyridoxal phosphate]]
+
[[Category: Aminotransferase]]
-
[[Category: pyruvate]]
+
[[Category: Apc91511 1]]
-
[[Category: structural genomic]]
+
[[Category: Glutamate decarboxylase]]
-
[[Category: transferase]]
+
[[Category: Mcsg]]
-
 
+
[[Category: PSI, Protein structure initiative]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:27:16 2008''
+
[[Category: Pyridoxal phosphate]]
 +
[[Category: Pyruvate]]
 +
[[Category: Transferase]]

Current revision

Crystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticus

PDB ID 2qma

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qma"
Personal tools