4yk1

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'''Unreleased structure'''
 
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The entry 4yk1 is ON HOLD
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==Crystal Structure of the BID Domain of Bep6 from Bartonella rochalimae==
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<StructureSection load='4yk1' size='340' side='right'caption='[[4yk1]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4yk1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bartonella_rochalimae_ATCC_BAA-1498 Bartonella rochalimae ATCC BAA-1498]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4YK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4YK1 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4yk1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4yk1 OCA], [https://pdbe.org/4yk1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4yk1 RCSB], [https://www.ebi.ac.uk/pdbsum/4yk1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4yk1 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/E6YLF3_9HYPH E6YLF3_9HYPH]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The BID (Bep intracellular delivery) domain functions as secretion signal in a subfamily of protein substrates of bacterial type IV secretion (T4S) systems. It mediates transfer of (1) relaxases and the attached DNA during bacterial conjugation, and (2) numerous Bartonella effector proteins (Beps) during protein transfer into host cells infected by pathogenic Bartonella species. Furthermore, BID domains of Beps have often evolved secondary effector functions within host cells. Here, we provide crystal structures for three representative BID domains and describe a novel conserved fold characterized by a compact, antiparallel four-helix bundle topped with a hook. The conserved hydrophobic core provides a rigid scaffold to a surface that, despite a few conserved exposed residues and similarities in charge distribution, displays significant variability. We propose that the genuine function of BID domains as T4S signal may primarily depend on their rigid structure, while the plasticity of their surface may facilitate adaptation to secondary effector functions.
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Authors: Seattle Structural Genomics Center for Infectious Disease
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The BID Domain of Type IV Secretion Substrates Forms a Conserved Four-Helix Bundle Topped with a Hook.,Stanger FV, de Beer TA, Dranow DM, Schirmer T, Phan I, Dehio C Structure. 2017 Jan 3;25(1):203-211. doi: 10.1016/j.str.2016.10.010. Epub 2016, Nov 23. PMID:27889208<ref>PMID:27889208</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Seattle Structural Genomics Center For Infectious Disease]]
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<div class="pdbe-citations 4yk1" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Bartonella rochalimae ATCC BAA-1498]]
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[[Category: Large Structures]]

Current revision

Crystal Structure of the BID Domain of Bep6 from Bartonella rochalimae

PDB ID 4yk1

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