5ajp

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==Crystal structure of the active form of GalNAc-T2 in complex with UDP and the glycopeptide MUC5AC-13==
==Crystal structure of the active form of GalNAc-T2 in complex with UDP and the glycopeptide MUC5AC-13==
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<StructureSection load='5ajp' size='340' side='right' caption='[[5ajp]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
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<StructureSection load='5ajp' size='340' side='right'caption='[[5ajp]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5ajp]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AJP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5AJP FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5ajp]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5AJP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5AJP FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ajn|5ajn]], [[5ajo|5ajo]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UDP:URIDINE-5-DIPHOSPHATE'>UDP</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Polypeptide_N-acetylgalactosaminyltransferase Polypeptide N-acetylgalactosaminyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.41 2.4.1.41] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ajp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ajp OCA], [https://pdbe.org/5ajp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ajp RCSB], [https://www.ebi.ac.uk/pdbsum/5ajp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ajp ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ajp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ajp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=5ajp RCSB], [http://www.ebi.ac.uk/pdbsum/5ajp PDBsum]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/GALT2_HUMAN GALT2_HUMAN]] Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b. Probably involved in O-linked glycosylation of the immunoglobulin A1 (IgA1) hinge region.<ref>PMID:9295285</ref> <ref>PMID:12438318</ref>
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[https://www.uniprot.org/uniprot/GALT2_HUMAN GALT2_HUMAN] Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Has a broad spectrum of substrates for peptides such as EA2, Muc5AC, Muc1a, Muc1b. Probably involved in O-linked glycosylation of the immunoglobulin A1 (IgA1) hinge region.<ref>PMID:9295285</ref> <ref>PMID:12438318</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Protein O-glycosylation is controlled by polypeptide GalNAc-transferases (GalNAc-Ts) that uniquely feature both a catalytic and lectin domain. The underlying molecular basis of how the lectin domains of GalNAc-Ts contribute to glycopeptide specificity and catalysis remains unclear. Here we present the first crystal structures of complexes of GalNAc-T2 with glycopeptides that together with enhanced sampling molecular dynamics simulations demonstrate a cooperative mechanism by which the lectin domain enables free acceptor sites binding of glycopeptides into the catalytic domain. Atomic force microscopy and small-angle X-ray scattering experiments further reveal a dynamic conformational landscape of GalNAc-T2 and a prominent role of compact structures that are both required for efficient catalysis. Our model indicates that the activity profile of GalNAc-T2 is dictated by conformational heterogeneity and relies on a flexible linker located between the catalytic and the lectin domains. Our results also shed light on how GalNAc-Ts generate dense decoration of proteins with O-glycans.
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Dynamic interplay between catalytic and lectin domains of GalNAc-transferases modulates protein O-glycosylation.,Lira-Navarrete E, de Las Rivas M, Companon I, Pallares MC, Kong Y, Iglesias-Fernandez J, Bernardes GJ, Peregrina JM, Rovira C, Bernado P, Bruscolini P, Clausen H, Lostao A, Corzana F, Hurtado-Guerrero R Nat Commun. 2015 May 5;6:6937. doi: 10.1038/ncomms7937. PMID:25939779<ref>PMID:25939779</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5ajp" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Polypeptide N-acetylgalactosaminyltransferase]]
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[[Category: Homo sapiens]]
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[[Category: Bernado, P]]
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[[Category: Large Structures]]
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[[Category: Bernardes, G J.L]]
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[[Category: Bernado P]]
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[[Category: Bruscolini, P]]
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[[Category: Bernardes GJL]]
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[[Category: Clausen, H]]
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[[Category: Bruscolini P]]
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[[Category: Companon, I]]
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[[Category: Clausen H]]
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[[Category: Corzana, F]]
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[[Category: Companon I]]
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[[Category: Hurtado-Guerrero, R]]
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[[Category: Corzana F]]
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[[Category: Iglesias-Fernandez, J]]
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[[Category: Hurtado-Guerrero R]]
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[[Category: Kong, Y]]
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[[Category: Iglesias-Fernandez J]]
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[[Category: Lira-Navarrete, E]]
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[[Category: Kong Y]]
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[[Category: Lostao, A]]
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[[Category: Lira-Navarrete E]]
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[[Category: Pallares, M C]]
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[[Category: Lostao A]]
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[[Category: Peregrina, J M]]
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[[Category: Pallares MC]]
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[[Category: Rovira, C]]
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[[Category: Peregrina JM]]
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[[Category: DelasRivas, M]]
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[[Category: Rovira C]]
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[[Category: Active form]]
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[[Category: DelasRivas M]]
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[[Category: Afm]]
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[[Category: Coarse-grained model]]
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[[Category: Compact form]]
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[[Category: Extended form]]
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[[Category: Galnac-t2]]
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[[Category: Glycopeptide]]
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[[Category: Inactive form]]
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[[Category: Lectin domain]]
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[[Category: Sax]]
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[[Category: Transferase]]
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Current revision

Crystal structure of the active form of GalNAc-T2 in complex with UDP and the glycopeptide MUC5AC-13

PDB ID 5ajp

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